Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BKP64_RS08960 Genome accession   NZ_CP017715
Coordinates   1967846..1968892 (-) Length   348 a.a.
NCBI ID   WP_070968724.1    Uniprot ID   -
Organism   Marinobacter salinus strain Hb8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1962846..1973892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP64_RS08940 (BKP64_08940) fixJ 1963674..1964300 (-) 627 WP_070968715.1 response regulator FixJ -
  BKP64_RS08945 (BKP64_08945) - 1964340..1966748 (-) 2409 WP_070973622.1 Lon protease family protein -
  BKP64_RS08950 (BKP64_08950) - 1966970..1967347 (+) 378 WP_070968718.1 PilZ domain-containing protein -
  BKP64_RS08955 (BKP64_08955) - 1967357..1967827 (-) 471 WP_070968721.1 flavodoxin family protein -
  BKP64_RS08960 (BKP64_08960) recA 1967846..1968892 (-) 1047 WP_070968724.1 recombinase RecA Machinery gene
  BKP64_RS08965 (BKP64_08965) pncC 1969058..1969558 (-) 501 WP_070968727.1 nicotinamide-nucleotide amidase -
  BKP64_RS08970 (BKP64_08970) - 1969871..1970479 (+) 609 WP_070968730.1 hypothetical protein -
  BKP64_RS08975 (BKP64_08975) - 1970928..1971449 (-) 522 WP_070968734.1 hypothetical protein -
  BKP64_RS08980 (BKP64_08980) - 1971513..1971992 (-) 480 WP_157755415.1 hypothetical protein -
  BKP64_RS08985 (BKP64_08985) - 1972096..1972470 (-) 375 WP_157755416.1 hypothetical protein -
  BKP64_RS08990 (BKP64_08990) - 1972544..1972984 (-) 441 WP_070968744.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37616.38 Da        Isoelectric Point: 5.5500

>NTDB_id=202200 BKP64_RS08960 WP_070968724.1 1967846..1968892(-) (recA) [Marinobacter salinus strain Hb8]
MEDNRKKALNAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRICEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLLIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENMDMATEIEA
KVRDKLMPKPVPKEKVEEAPAEANGELL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=202200 BKP64_RS08960 WP_070968724.1 1967846..1968892(-) (recA) [Marinobacter salinus strain Hb8]
ATGGAAGACAACCGCAAGAAAGCATTGAACGCAGCACTGGGCCAGATCGAGCGCCAATTTGGTAAAGGCGCGGTGATGAA
GATGGGCGACCAGCCCCGTGAAGCCATTCCTGCGGTCTCCACGGGTTCACTCGGACTGGATGTTGCCCTTGGTATTGGCG
GCCTGCCTTACGGTCGTATCTGTGAGATCTACGGTCCGGAAAGTTCCGGTAAAACCACGTTGACCCTGCAAGTGATTGCG
GAAGCGCAAAAGAAGGGCAAGACGTGTGCTTTCGTTGATGCCGAGCACGCCCTCGATCCTGTTTATGCCGAGAAGCTGGG
GGTAAACGTGGATGAGCTGCTGGTGTCCCAGCCGGATACTGGTGAACAGGCGCTGGAAATCTGCGATATGCTGGTTCGTT
CCAACGCGGTGGACGTGATCATCGTCGACTCCGTTGCGGCCCTGACACCGAAAGCGGAAATCGAAGGCGAAATGGGCGAT
AGCCACGTTGGGCTTCAGGCACGACTGATGTCCCAGGCGCTGCGTAAACTGACCGGTAACGTAAAGCATGCCAACTGTTT
GTTGATCTTCATTAACCAGATCCGGATGAAAATTGGTGTTATGTTCGGCTCGCCCGAAACCACAACTGGCGGTAACGCCC
TGAAGTTTTACTCCTCTGTTCGTTTGGACATCCGCCGCATTGGCGCGGTAAAAGACGGCGATGAAGTTGTAGGTAACGAA
ACCCGGGTGAAAGTGGTCAAGAACAAGGTGTCTCCGCCGTTCAAGCAGGCTGAGTTCCAGATCATGTACGGCAAGGGTAT
CTATCACATGGCCGAAGTTCTGGATATGGGAGTGAAAGAAGGCTTCGTGGACAAATCCGGTGCCTGGTATGCCTATAACG
GCGACAAAATTGGCCAGGGCAAGGCGAATGCCTGCAAATTCCTGGAAGAGAACATGGATATGGCGACCGAAATTGAAGCC
AAAGTTCGCGACAAGTTAATGCCAAAGCCGGTGCCAAAAGAAAAAGTCGAAGAGGCCCCGGCAGAAGCTAACGGTGAATT
GCTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.346

93.966

0.764
  recA Ralstonia pseudosolanacearum GMI1000

68.661

100

0.693
  recA Acinetobacter baylyi ADP1

70.058

98.851

0.693
  recA Vibrio cholerae strain A1552

73.394

93.966

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.966

0.69
  recA Glaesserella parasuis strain SC1401

72.256

94.253

0.681
  recA Acinetobacter baumannii D1279779

72.171

93.966

0.678
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.103

0.664
  recA Helicobacter pylori strain NCTC11637

60.641

98.563

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.69

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.997

93.966

0.592
  recA Helicobacter pylori 26695

60.058

98.563

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.241

0.58
  recA Streptococcus mutans UA159

55.932

100

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

58.507

96.264

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

93.103

0.543
  recA Streptococcus pneumoniae Rx1

57.975

93.678

0.543
  recA Streptococcus pneumoniae D39

57.975

93.678

0.543
  recA Streptococcus pneumoniae R6

57.975

93.678

0.543
  recA Streptococcus pneumoniae TIGR4

57.975

93.678

0.543
  recA Streptococcus pyogenes NZ131

57.317

94.253

0.54
  recA Streptococcus mitis SK321

57.895

92.816

0.537
  recA Streptococcus mitis NCTC 12261

57.895

92.816

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.816

0.537

Multiple sequence alignment