Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LA20531_RS09020 Genome accession   NZ_CP017706
Coordinates   1752808..1753902 (+) Length   364 a.a.
NCBI ID   WP_056939482.1    Uniprot ID   A0AAW6B7X4
Organism   Lactobacillus amylovorus DSM 20531     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747808..1758902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA20531_RS09000 (LA20531_08765) - 1748868..1750118 (+) 1251 WP_056939479.1 M16 family metallopeptidase -
  LA20531_RS09005 (LA20531_08770) ymfI 1750125..1750853 (+) 729 WP_056939480.1 elongation factor P 5-aminopentanone reductase -
  LA20531_RS09010 (LA20531_08775) - 1750921..1752036 (+) 1116 WP_056939481.1 helix-turn-helix domain-containing protein -
  LA20531_RS09015 (LA20531_08780) pgsA 1752059..1752619 (+) 561 WP_013437469.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LA20531_RS09020 (LA20531_08785) recA 1752808..1753902 (+) 1095 WP_056939482.1 recombinase RecA Machinery gene
  LA20531_RS09025 (LA20531_08790) rny 1754019..1755650 (+) 1632 WP_013641657.1 ribonuclease Y -
  LA20531_RS09030 (LA20531_08795) - 1755755..1756921 (+) 1167 WP_056939483.1 glycosyltransferase family 4 protein -
  LA20531_RS09035 (LA20531_08800) - 1756955..1757617 (-) 663 WP_056939484.1 YigZ family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39478.84 Da        Isoelectric Point: 5.4114

>NTDB_id=202124 LA20531_RS09020 WP_056939482.1 1752808..1753902(+) (recA) [Lactobacillus amylovorus DSM 20531]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKNDRIGQGRENAKKYLEDHPDIYQDIQ
EQVRKAYGIDEKSIADRENPEKIKEKREEAQQEESDAKDAEKTK

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=202124 LA20531_RS09020 WP_056939482.1 1752808..1753902(+) (recA) [Lactobacillus amylovorus DSM 20531]
ATGGCCAAAGATGAAAAGCAAGCTGCATTAGACGCAGCTCTTAAGAAAATTGAAAAGAACTTTGGAAAAGGTGCCGTTAT
GCGTATGGGTGAAAAAGCAGATACGCAAATTTCAACAGTGCCAACCGGTTCACTTGCCTTAGATGCCGCTATTGGTGTTG
GTGGTTATCCTCGTGGCAGAATTATCGAAATTTATGGTCCAGAATCATCTGGTAAGACTACTGTAGCCCTTCATGCAGTT
GCTGAAGTGCAAAAACGTGGCGGAACAGCTGCTTATATCGATGCCGAAAACGCAATGGATCCGGCTTACGCAGAAGCTTT
GGGCGTGGACATTGATTCATTGATTCTTTCACAACCTAATACTGGTGAAGAAGGTTTGCAAATTGCCGATACCTTGATTT
CCAGTGGTGCGATTGACATTGTGGTAGTTGACTCTGTAGCTGCCTTAGTACCACGTGCCGAAATTGAAGGTGAGATGGGG
GATGCTCACGTCGGCTTGCAAGCTCGTTTGATGAGTCAAGCTTTGCGTAAATTATCAGGTACCATTTCTAAGACTAAGAC
AATTGCGATATTTATTAACCAGATCCGTGAAAAAGTTGGTGTCATGTTTGGTAACCCTGAAACCACACCAGGTGGTCGAG
CACTTAAGTTCTACTCAACTATTCGTCTTGAAGTAAGAAGAGCAGAACAAATTAAGCAATCAGGTGATGTTCTTGGTAAC
CGCGTTAAGATTAAGGTTGTTAAGAACAAGGTTGCTCCACCATTCAAGGTTGCCGAAGTTGATATCATGTATGGCAAGGG
TATTTCACAAAGTGGTGAATTGCTTGATATGGCTGCCGACAAGGATATTATTGATAAGGCTGGTTCATGGTACTCATACA
AGAATGACCGAATTGGCCAAGGGCGTGAGAATGCCAAGAAGTATCTTGAAGATCACCCAGATATTTATCAAGATATTCAA
GAACAGGTTCGTAAGGCTTATGGAATTGACGAAAAGTCAATTGCTGATCGCGAGAATCCTGAAAAGATCAAGGAAAAGCG
TGAAGAAGCACAACAAGAAGAATCTGATGCCAAAGATGCTGAAAAAACTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.873

90.934

0.745
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

90.659

0.662
  recA Streptococcus pneumoniae D39

67.227

98.077

0.659
  recA Streptococcus pneumoniae R6

67.227

98.077

0.659
  recA Streptococcus pneumoniae TIGR4

67.227

98.077

0.659
  recA Streptococcus pneumoniae Rx1

67.227

98.077

0.659
  recA Streptococcus mitis NCTC 12261

66.573

97.802

0.651
  recA Streptococcus mutans UA159

66.006

96.978

0.64
  recA Streptococcus pyogenes NZ131

69.605

90.385

0.629
  recA Streptococcus mitis SK321

68.997

90.385

0.624
  recA Lactococcus lactis subsp. cremoris KW2

65.476

92.308

0.604
  recA Neisseria gonorrhoeae MS11

59.078

95.33

0.563
  recA Neisseria gonorrhoeae MS11

59.078

95.33

0.563
  recA Neisseria gonorrhoeae strain FA1090

59.078

95.33

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

90.11

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.522

93.132

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.736

0.533
  recA Acinetobacter baylyi ADP1

59.317

88.462

0.525
  recA Acinetobacter baumannii D1279779

59.317

88.462

0.525
  recA Helicobacter pylori strain NCTC11637

55.848

93.956

0.525
  recA Helicobacter pylori 26695

55.848

93.956

0.525
  recA Pseudomonas stutzeri DSM 10701

58.879

88.187

0.519
  recA Glaesserella parasuis strain SC1401

52.707

96.429

0.508
  recA Ralstonia pseudosolanacearum GMI1000

58.786

85.989

0.505
  recA Vibrio cholerae strain A1552

56.832

88.462

0.503
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

88.462

0.503

Multiple sequence alignment