Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BJP26_RS08695 Genome accession   NZ_CP017578
Coordinates   1841248..1842321 (-) Length   357 a.a.
NCBI ID   WP_017978889.1    Uniprot ID   A0A0D1MHJ4
Organism   Sphingomonas melonis TY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836248..1847321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP26_RS08675 (BJP26_08705) - 1836751..1838010 (-) 1260 WP_017978885.1 M24 family metallopeptidase -
  BJP26_RS08680 (BJP26_08710) - 1838083..1839396 (+) 1314 WP_062126785.1 dicarboxylate/amino acid:cation symporter -
  BJP26_RS08685 (BJP26_08715) - 1839407..1840036 (-) 630 WP_017978887.1 glutathione S-transferase family protein -
  BJP26_RS08690 (BJP26_08720) - 1840033..1840869 (-) 837 WP_017978888.1 class I SAM-dependent methyltransferase -
  BJP26_RS08695 (BJP26_08725) recA 1841248..1842321 (-) 1074 WP_017978889.1 recombinase RecA Machinery gene
  BJP26_RS08700 (BJP26_08730) - 1842657..1843487 (-) 831 WP_017978890.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  BJP26_RS08705 (BJP26_08735) - 1843484..1845019 (-) 1536 WP_017978891.1 tetratricopeptide repeat protein -
  BJP26_RS08710 (BJP26_08740) - 1845078..1846730 (-) 1653 WP_017978892.1 electron transfer flavoprotein-ubiquinone oxidoreductase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38450.97 Da        Isoelectric Point: 5.5774

>NTDB_id=200546 BJP26_RS08695 WP_017978889.1 1841248..1842321(-) (recA) [Sphingomonas melonis TY]
MAANLKVIDTGMATANADRQKALDAALAQIDRAFGKGSAMKLGQKETMQVEAISTGSLGLDIALGVGGLPRGRVIEVYGP
ESSGKTTLALHVIAEAQKNGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGAIKDREEVTGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGSWFSYDSVRIGQGRENAKN
YLRENPEMADRLEKAIRQRTEKVAEEMMAGPEADDDL

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=200546 BJP26_RS08695 WP_017978889.1 1841248..1842321(-) (recA) [Sphingomonas melonis TY]
ATGGCCGCCAATCTGAAAGTGATCGACACCGGCATGGCAACCGCAAACGCAGACCGTCAAAAGGCGCTCGACGCCGCCCT
CGCGCAGATCGACCGCGCCTTCGGCAAGGGCAGCGCGATGAAGCTCGGTCAGAAGGAAACGATGCAGGTCGAGGCGATCT
CGACCGGCTCGCTCGGCCTCGACATCGCCTTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAAGTCTATGGCCCT
GAATCGTCGGGCAAGACGACGCTTGCGCTGCATGTCATCGCCGAAGCGCAGAAGAACGGCGGCACCGCCGCCTTCGTCGA
CGCCGAACATGCGCTCGATCCCGTCTATGCCAAGAAGCTGGGCGTCAACATCGACGAACTGATCGTGTCGCAGCCCGACA
CCGGCGAACAGGCGCTCGAAATCACCGACACGCTCGTCCGCTCGAACGCGATCGACGTGCTGGTGGTCGATTCGGTCGCC
GCGCTGGTGCCGCGCGCCGAAATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGTCGCAGTC
GCTGCGCAAGCTCACCGGCTCGATCAGCCGCTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGCAATCCGGAAACGACGACGGGCGGCAACGCGCTGAAGTTCTACGCCTCCGTCCGCCTCGACATCCGCCGC
ACGGGCGCGATCAAGGACCGCGAGGAAGTCACCGGCAACACCACGCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAATTCGACATCATGTACGGCGAGGGCATTTCGAAGATCGGCGAGATCCTCGACCTCGGCGTGAAGG
CGGGCCTCGTCGAAAAGTCGGGCAGCTGGTTCTCCTACGATTCGGTGCGGATCGGGCAGGGGCGTGAGAACGCCAAGAAC
TACCTGCGCGAAAACCCCGAAATGGCCGACCGCCTCGAAAAGGCGATCCGCCAGCGCACCGAAAAGGTCGCCGAGGAAAT
GATGGCCGGCCCGGAAGCCGACGACGATCTGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1MHJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

69.254

93.838

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.254

93.838

0.65
  recA Pseudomonas stutzeri DSM 10701

68.343

94.678

0.647
  recA Ralstonia pseudosolanacearum GMI1000

69.419

91.597

0.636
  recA Neisseria gonorrhoeae MS11

69.782

89.916

0.627
  recA Neisseria gonorrhoeae MS11

69.782

89.916

0.627
  recA Neisseria gonorrhoeae strain FA1090

69.782

89.916

0.627
  recA Glaesserella parasuis strain SC1401

69.906

89.356

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.089

94.678

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.307

94.958

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

67.183

90.476

0.608
  recA Acinetobacter baylyi ADP1

63.235

95.238

0.602
  recA Helicobacter pylori strain NCTC11637

63.018

94.678

0.597
  recA Acinetobacter baumannii D1279779

65.839

90.196

0.594
  recA Helicobacter pylori 26695

62.426

94.678

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

64.396

90.476

0.583
  recA Streptococcus pneumoniae D39

59.767

96.078

0.574
  recA Streptococcus pneumoniae Rx1

59.767

96.078

0.574
  recA Streptococcus pneumoniae R6

59.767

96.078

0.574
  recA Streptococcus pneumoniae TIGR4

59.767

96.078

0.574
  recA Streptococcus mitis NCTC 12261

59.824

95.518

0.571
  recA Streptococcus mitis SK321

59.531

95.518

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

91.036

0.566
  recA Streptococcus pyogenes NZ131

60.802

90.756

0.552
  recA Streptococcus mutans UA159

57.478

95.518

0.549
  recA Lactococcus lactis subsp. cremoris KW2

60

91.036

0.546

Multiple sequence alignment