Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BIZ42_RS16660 Genome accession   NZ_CP017483
Coordinates   3737392..3738432 (+) Length   346 a.a.
NCBI ID   WP_026069798.1    Uniprot ID   A0A6P1EBH6
Organism   Stenotrophomonas sp. LM091     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3732392..3743432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ42_RS16640 (BIZ42_16640) hflX 3732400..3733710 (+) 1311 WP_070427094.1 ribosome rescue GTPase HflX -
  BIZ42_RS16645 (BIZ42_16645) - 3733886..3734380 (+) 495 WP_019183317.1 CinA family protein -
  BIZ42_RS16650 (BIZ42_16650) ubiB 3734417..3736096 (+) 1680 WP_019183316.1 2-polyprenylphenol 6-hydroxylase -
  BIZ42_RS16655 (BIZ42_16655) lexA 3736538..3737188 (+) 651 WP_019183315.1 transcriptional repressor LexA -
  BIZ42_RS16660 (BIZ42_16660) recA 3737392..3738432 (+) 1041 WP_026069798.1 recombinase RecA Machinery gene
  BIZ42_RS16665 (BIZ42_16665) recX 3738543..3739034 (+) 492 WP_019183313.1 recombination regulator RecX -
  BIZ42_RS16670 (BIZ42_16670) alaS 3739142..3741790 (+) 2649 WP_070427095.1 alanine--tRNA ligase -
  BIZ42_RS16675 (BIZ42_16675) csrA 3741935..3742138 (+) 204 WP_019183311.1 carbon storage regulator CsrA -
  BIZ42_RS19950 - 3742384..3742518 (-) 135 WP_257785232.1 hypothetical protein -
  BIZ42_RS16685 (BIZ42_16685) - 3742653..3743294 (+) 642 WP_083279887.1 ankyrin repeat domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37404.91 Da        Isoelectric Point: 4.8376

>NTDB_id=198722 BIZ42_RS16660 WP_026069798.1 3737392..3738432(+) (recA) [Stenotrophomonas sp. LM091]
MDENKKRALTAALSQIEKQFGKGAVMRMGDRVVEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQGKDNARGYLRDNPQVAQRL
EAELREKFQPEEAVREGGDDAEDDAE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=198722 BIZ42_RS16660 WP_026069798.1 3737392..3738432(+) (recA) [Stenotrophomonas sp. LM091]
ATGGACGAAAACAAAAAGCGCGCCCTCACCGCCGCGCTGAGCCAGATCGAAAAGCAGTTCGGCAAGGGCGCCGTGATGCG
CATGGGCGACCGTGTCGTCGAGGCGGTCGAGGTCATCCCTACCGGTTCGCTGATGCTGGATATCGCACTCGGCATCGGCG
GCCTGCCCAAGGGCCGTGTGGTGGAGATCTACGGTCCGGAATCGTCGGGCAAGACCACCCTGACCCTGCAGGCGATCGCC
GAATGCCAGAAGAAGGGCGGTACCGCCGCCTTCATCGATGCCGAGCACGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
CGTCAACGTGGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CCAGCTCGGTGGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCTGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGGTCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTGATCACCGAAATTCTGTACGGCGA
AGGCATCAGCCGCGAAGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTCGTCGAGAAGGCAGGCGCCTGGTACAGCT
ACGGCGAAGAGCGCATCGGCCAGGGCAAGGACAACGCCCGCGGCTATCTTCGCGACAACCCGCAGGTTGCCCAGCGTCTG
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCGGAAGAAGCCGTGCGTGAAGGCGGCGATGACGCCGAAGACGACGCCGAGTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1EBH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.52

100

0.705
  recA Acinetobacter baylyi ADP1

72.866

94.798

0.691
  recA Ralstonia pseudosolanacearum GMI1000

75.719

90.462

0.685
  recA Acinetobacter baumannii D1279779

72.256

94.798

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.88

95.954

0.671
  recA Vibrio cholerae strain A1552

69.88

95.954

0.671
  recA Neisseria gonorrhoeae MS11

66.57

99.422

0.662
  recA Neisseria gonorrhoeae MS11

66.57

99.422

0.662
  recA Neisseria gonorrhoeae strain FA1090

66.57

99.422

0.662
  recA Glaesserella parasuis strain SC1401

64.162

100

0.642
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

96.532

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.176

98.266

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

94.22

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

93.931

0.587
  recA Helicobacter pylori strain NCTC11637

60.778

96.532

0.587
  recA Helicobacter pylori 26695

60.479

96.532

0.584
  recA Streptococcus pyogenes NZ131

60.606

95.376

0.578
  recA Streptococcus mutans UA159

60.303

95.376

0.575
  recA Streptococcus mitis SK321

60.366

94.798

0.572
  recA Streptococcus mitis NCTC 12261

60.061

94.798

0.569
  recA Streptococcus pneumoniae Rx1

60.061

94.798

0.569
  recA Streptococcus pneumoniae D39

60.061

94.798

0.569
  recA Streptococcus pneumoniae R6

60.061

94.798

0.569
  recA Streptococcus pneumoniae TIGR4

60.061

94.798

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.143

97.11

0.555
  recA Lactococcus lactis subsp. cremoris KW2

58.462

93.931

0.549

Multiple sequence alignment