Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BJD96_RS08340 Genome accession   NZ_CP017460
Coordinates   1741416..1742471 (-) Length   351 a.a.
NCBI ID   WP_096810034.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain JS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736416..1747471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD96_RS08325 (BJD96_08210) - 1737838..1738626 (-) 789 WP_096810028.1 TIGR00282 family metallophosphoesterase -
  BJD96_RS08330 (BJD96_08215) - 1738792..1739007 (+) 216 WP_096810030.1 hypothetical protein -
  BJD96_RS08335 (BJD96_08220) rny 1739517..1741076 (-) 1560 WP_096810032.1 ribonuclease Y -
  BJD96_RS08340 (BJD96_08225) recA 1741416..1742471 (-) 1056 WP_096810034.1 recombinase RecA Machinery gene
  BJD96_RS08345 (BJD96_08230) - 1742643..1743788 (-) 1146 WP_096810036.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  BJD96_RS08350 (BJD96_08235) pgsA 1744019..1744597 (-) 579 WP_096810038.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BJD96_RS08355 (BJD96_08240) - 1744646..1745038 (-) 393 WP_096810040.1 helix-turn-helix domain-containing protein -
  BJD96_RS08360 (BJD96_08245) - 1745069..1745899 (-) 831 WP_096810042.1 DUF3388 domain-containing protein -
  BJD96_RS08365 (BJD96_08250) ymfI 1746041..1746745 (-) 705 WP_096810044.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38197.32 Da        Isoelectric Point: 5.0330

>NTDB_id=198493 BJD96_RS08340 WP_096810034.1 1741416..1742471(-) (recA) [Staphylococcus nepalensis strain JS1]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIKNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKIKEEIDQ
KLRETLGIFDGDVEEKEQEETQGTLLDEKEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=198493 BJD96_RS08340 WP_096810034.1 1741416..1742471(-) (recA) [Staphylococcus nepalensis strain JS1]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ACTTGGTGATAACGAAGCACGTAAAGTTTCAAGTGTATCAAGTGGTTCAGTAACTCTAGATAATGCGCTCGGCGTGGGTG
GCTACCCTAAAGGTAGAATAATTGAAATTTACGGTCCAGAAAGTTCTGGTAAAACTACTGTAGCTTTACACGCAATCGCC
GAAGTACAAAAAAATGGTGGTATTGCAGCATTTATTGATGCGGAACACGCGTTAGACCCAGTTTATGCAGAAGCATTAGG
TGTCGACATAAAAAACTTATATTTATCTCAACCAGATCACGGTGAACAAGGTTTAGAAATTGCAGAAGCATTTGTTAGAA
GTGGCGCAGTAGATATTGTGGTTGTTGACTCCGTAGCAGCTTTAACACCAAAAGCCGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTTGGTTTGCAAGCACGTTTAATGTCACAAGCGCTTCGTAAATTATCCGGTGCCATCTCTAAATCAAATACAAC
AGCCGTATTTATCAATCAAATCCGTGAAAAAGTCGGTGTTATGTTTGGTAATCCAGAAACGACGCCAGGCGGACGTGCAT
TGAAATTCTATAGTTCAGTGCGTTTAGAAGTACGTCGTGCTGAACAACTAAAACAAGGGCAAGAAATTGTTGGTAATAGA
ACAAAAATTAAAGTAGTTAAAAATAAAGTCGCACCCCCATTTAGAGTGGCAGAAGTAGACATGATGTACGGTAAAGGTAT
CTCTAAAGAAGGAGAGCTAATCGATCTTGGCGTTGAAAATGAAATTGTGAATAAATCTGGCGCTTGGTACTCATATAATG
GTGAACGTATGGGACAAGGTAAAGAAAATGTTAAACTTTATTTAAAAGAAAATCCTAAAATCAAAGAGGAAATTGATCAA
AAATTACGCGAAACATTAGGTATTTTTGATGGAGATGTAGAAGAAAAAGAGCAAGAAGAAACACAAGGTACTCTGCTTGA
TGAAAAAGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

92.877

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

70.732

93.447

0.661
  recA Streptococcus mutans UA159

64.306

100

0.647
  recA Streptococcus mitis NCTC 12261

64.928

98.291

0.638
  recA Streptococcus pneumoniae D39

65.015

97.721

0.635
  recA Streptococcus pneumoniae Rx1

65.015

97.721

0.635
  recA Streptococcus pneumoniae R6

65.015

97.721

0.635
  recA Streptococcus pneumoniae TIGR4

65.015

97.721

0.635
  recA Neisseria gonorrhoeae MS11

64.826

98.006

0.635
  recA Neisseria gonorrhoeae strain FA1090

64.826

98.006

0.635
  recA Neisseria gonorrhoeae MS11

64.826

98.006

0.635
  recA Streptococcus mitis SK321

64.638

98.291

0.635
  recA Streptococcus pyogenes NZ131

67.477

93.732

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.302

0.621
  recA Acinetobacter baylyi ADP1

65.951

92.877

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.046

93.732

0.61
  recA Acinetobacter baumannii D1279779

65.644

92.877

0.61
  recA Helicobacter pylori 26695

64.329

93.447

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.417

92.877

0.598
  recA Vibrio cholerae strain A1552

64.417

92.877

0.598
  recA Helicobacter pylori strain NCTC11637

64.024

93.447

0.598
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.174

0.587
  recA Pseudomonas stutzeri DSM 10701

61.963

92.877

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.302

0.573
  recA Glaesserella parasuis strain SC1401

62.229

92.023

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.168

0.55

Multiple sequence alignment