Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BI380_RS20300 Genome accession   NZ_CP017420
Coordinates   4369213..4370316 (+) Length   367 a.a.
NCBI ID   WP_016454235.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain CM13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4364213..4375316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI380_RS20280 (BI380_20280) - 4365231..4366211 (+) 981 WP_016454232.1 LysR substrate-binding domain-containing protein -
  BI380_RS20285 (BI380_20285) - 4366195..4367694 (-) 1500 WP_046238644.1 sensor histidine kinase -
  BI380_RS20290 (BI380_20290) - 4367790..4368464 (-) 675 WP_012202808.1 response regulator transcription factor -
  BI380_RS20295 (BI380_20295) - 4368565..4369065 (-) 501 WP_046238645.1 MarR family winged helix-turn-helix transcriptional regulator -
  BI380_RS20300 (BI380_20300) recA 4369213..4370316 (+) 1104 WP_016454235.1 recombinase RecA Machinery gene
  BI380_RS20305 (BI380_20305) recX 4370519..4370998 (+) 480 WP_016449399.1 recombination regulator RecX -
  BI380_RS20310 (BI380_20310) yddG 4370995..4371915 (-) 921 WP_046238646.1 aromatic amino acid DMT transporter YddG -
  BI380_RS20315 (BI380_20315) - 4371938..4373827 (-) 1890 WP_046238647.1 hypothetical protein -
  BI380_RS20320 (BI380_20320) argC 4373824..4374756 (-) 933 WP_046238648.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38938.61 Da        Isoelectric Point: 5.3675

>NTDB_id=198012 BI380_RS20300 WP_016454235.1 4369213..4370316(+) (recA) [Delftia tsuruhatensis strain CM13]
MNTAVTTANSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDMIVVDSVAALTPRA
EIEGEMGDQLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKK
GDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENS
GLAVEIENKVRDSLGIALLPTAGGDAPEAKAAKAGKAKADKDGVIEA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=198012 BI380_RS20300 WP_016454235.1 4369213..4370316(+) (recA) [Delftia tsuruhatensis strain CM13]
ATGAACACCGCCGTCACCACCGCCAACAGTGAAAAAGCCAAGGCCCTGCAGGCCGCACTCGCCCAGATCGAAAAGCAGTT
CGGCAAGGGCACGATCATGCGCCTGGGTGAAGGCGAAGCCATCCAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCC
TGGACATCGCCCTGGGTGTGGGCGGCCTGCCCCGTGGCCGCGTGATCGAGATCTACGGCCCTGAATCCTCGGGCAAGACC
ACGCTGACGCTGCAGGTCATCGCCGAAATGCAAAAGCAGGGCGGCACCTGCGCCTTCATCGACGCAGAACACGCGCTGGA
CACCAGCTATGCCCAGAAGCTGGGCGTGAACCTCAACGAAGTGCTGATCAGCCAGCCCGACACCGGCGAGCAGGCCCTGG
AAATCGTGGACAGCCTGGTGCGCTCGGGCGCCGTGGACATGATCGTCGTGGACTCGGTGGCCGCACTGACACCGCGCGCC
GAAATCGAAGGCGAGATGGGCGACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCTC
CACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCG
AAACCACCACGGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGCACCGGCACCATCAAGAAG
GGCGACGAAGCCATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGACCGCCGAGTT
CGACATCCTCTTCGGCGAAGGCATCTCGCGCGAAGGTGAAATCCTGGACATGGGCGTCAACGCCAAGATCCTCGACAAGT
CGGGGGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGTCGCGACAACGCCCGCGAATTCCTGCGCGAGAACAGC
GGCCTGGCCGTGGAGATCGAGAACAAGGTGCGCGACAGCCTGGGCATCGCCCTGCTGCCTACGGCCGGTGGCGATGCCCC
CGAAGCCAAGGCCGCCAAGGCGGGCAAGGCCAAGGCCGACAAGGACGGCGTGATCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.21

85.559

0.695
  recA Neisseria gonorrhoeae MS11

67.919

94.278

0.64
  recA Neisseria gonorrhoeae strain FA1090

67.919

94.278

0.64
  recA Neisseria gonorrhoeae MS11

67.919

94.278

0.64
  recA Glaesserella parasuis strain SC1401

69.76

91.008

0.635
  recA Pseudomonas stutzeri DSM 10701

70.859

88.828

0.629
  recA Acinetobacter baumannii D1279779

70.245

88.828

0.624
  recA Acinetobacter baylyi ADP1

69.939

88.828

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.325

88.828

0.616
  recA Vibrio cholerae strain A1552

69.325

88.828

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.469

91.826

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

89.646

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.101

0.575
  recA Helicobacter pylori 26695

64.329

89.373

0.575
  recA Helicobacter pylori strain NCTC11637

64.329

89.373

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

90.736

0.572
  recA Streptococcus mutans UA159

58.333

98.093

0.572
  recA Streptococcus pyogenes NZ131

62.31

89.646

0.559
  recA Streptococcus pneumoniae R6

61.329

90.191

0.553
  recA Lactococcus lactis subsp. cremoris KW2

61.329

90.191

0.553
  recA Streptococcus pneumoniae Rx1

61.329

90.191

0.553
  recA Streptococcus pneumoniae D39

61.329

90.191

0.553
  recA Streptococcus pneumoniae TIGR4

61.329

90.191

0.553
  recA Streptococcus mitis SK321

61.027

90.191

0.55
  recA Streptococcus mitis NCTC 12261

61.027

90.191

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.459

90.736

0.54

Multiple sequence alignment