Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BI364_RS13380 Genome accession   NZ_CP017415
Coordinates   2771748..2772788 (-) Length   346 a.a.
NCBI ID   WP_070080074.1    Uniprot ID   -
Organism   Acidihalobacter yilgarnensis strain F5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2766748..2777788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI364_RS13360 (BI364_13360) csrA 2766956..2767159 (-) 204 WP_070079175.1 carbon storage regulator CsrA -
  BI364_RS13365 (BI364_13365) - 2767349..2768596 (-) 1248 WP_070079176.1 aspartate kinase -
  BI364_RS13370 (BI364_13370) alaS 2768643..2771276 (-) 2634 WP_070080073.1 alanine--tRNA ligase -
  BI364_RS13375 (BI364_13375) - 2771300..2771839 (-) 540 WP_407639322.1 regulatory protein RecX -
  BI364_RS13380 (BI364_13380) recA 2771748..2772788 (-) 1041 WP_070080074.1 recombinase RecA Machinery gene
  BI364_RS13385 (BI364_13385) thpR 2772840..2773403 (-) 564 WP_070079178.1 RNA 2',3'-cyclic phosphodiesterase -
  BI364_RS13390 (BI364_13390) - 2773390..2773878 (-) 489 WP_070080075.1 nicotinamide-nucleotide amidohydrolase family protein -
  BI364_RS13395 (BI364_13395) - 2773979..2774809 (+) 831 WP_070079179.1 ferritin-like domain-containing protein -
  BI364_RS13400 (BI364_13400) - 2774921..2775289 (+) 369 WP_070079180.1 MbcA/ParS/Xre antitoxin family protein -
  BI364_RS13405 (BI364_13405) - 2775292..2776038 (+) 747 WP_070079181.1 RES family NAD+ phosphorylase -
  BI364_RS13410 (BI364_13410) - 2776397..2777092 (-) 696 WP_070079182.1 APC family permease -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37180.41 Da        Isoelectric Point: 5.3539

>NTDB_id=197992 BI364_RS13380 WP_070080074.1 2771748..2772788(-) (recA) [Acidihalobacter yilgarnensis strain F5]
MDENRKKALAAALGQIEKQFGKGSVMRMGDSPASRDIAVISTGSLALDVALGVGGLPRGRVVEIYGPESSGKTTLTLETI
AECQRVGGTCAFIDAEHALDPSYAEKLGVKVDDLLVSQPDTGEQALEIADMLVRSGAVDLVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGN
ETRVKVVKNKIAPPFRQAEFEILYGEGVSREGELIEMGVQQGLVDKSGAWYSYNGERIGQGKDNVRTFLKEHPAMADEID
RALRDRLLPKRGGEAANAPAEQEADA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=197992 BI364_RS13380 WP_070080074.1 2771748..2772788(-) (recA) [Acidihalobacter yilgarnensis strain F5]
GTGGACGAAAATCGTAAAAAGGCCCTCGCGGCGGCACTTGGTCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTCATGCG
CATGGGTGACAGTCCCGCGTCGCGTGATATCGCGGTGATATCGACCGGTTCGCTCGCCCTGGACGTCGCATTGGGTGTGG
GTGGCTTGCCGCGCGGCCGTGTGGTCGAGATCTACGGGCCGGAATCCTCGGGTAAGACCACGCTGACCTTGGAGACCATC
GCCGAATGCCAGCGCGTGGGGGGCACCTGCGCCTTCATCGACGCCGAGCATGCGCTTGATCCCAGCTATGCCGAGAAGCT
GGGTGTCAAGGTCGACGATCTGCTGGTGTCGCAGCCCGATACCGGCGAGCAGGCGCTTGAGATCGCCGATATGCTGGTGC
GCTCTGGTGCGGTTGATCTTGTGGTGGTCGACTCGGTTGCCGCCTTGACCCCGAAGGCTGAAATCGAAGGTGAGATGGGC
GATTCGCACGTTGGCCTACAGGCCCGATTGATGTCGCAGGCATTGCGCAAGCTCACCGCCAATATCAAACGCTCCAATAC
CCTGGTGATTTTCATCAACCAGATCCGCATGAAGATCGGGGTCATGTTCGGTAGCCCGGAGACCACGACCGGCGGTAATG
CACTGAAATTTTATGCCTCGGTGCGTCTGGACATCCGTCGCATCGGCTCGATCAAGCGGGGTGATGAGGTAGTGGGCAAC
GAGACGCGCGTGAAGGTGGTCAAGAACAAGATCGCGCCGCCTTTTCGTCAGGCCGAATTCGAGATTCTCTACGGCGAGGG
CGTGTCGCGCGAGGGCGAGCTGATCGAGATGGGCGTGCAGCAGGGATTGGTCGATAAATCTGGCGCCTGGTATAGCTACA
ACGGCGAACGGATTGGTCAGGGCAAGGACAACGTGCGTACCTTCCTCAAGGAGCACCCTGCGATGGCTGATGAAATCGAT
CGCGCGCTACGTGATCGTCTGTTGCCCAAGCGGGGCGGCGAGGCCGCGAATGCGCCAGCCGAGCAGGAAGCCGACGCCTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.145

100

0.751
  recA Acinetobacter baylyi ADP1

71.965

100

0.72
  recA Ralstonia pseudosolanacearum GMI1000

79.167

90.173

0.714
  recA Vibrio cholerae strain A1552

75

94.798

0.711
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

94.798

0.711
  recA Acinetobacter baumannii D1279779

71.304

99.711

0.711
  recA Neisseria gonorrhoeae MS11

75.617

93.642

0.708
  recA Neisseria gonorrhoeae MS11

75.617

93.642

0.708
  recA Neisseria gonorrhoeae strain FA1090

75.617

93.642

0.708
  recA Glaesserella parasuis strain SC1401

70.154

93.931

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.463

94.798

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

96.532

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

65.325

93.353

0.61
  recA Helicobacter pylori 26695

64.329

94.798

0.61
  recA Helicobacter pylori strain NCTC11637

64.024

94.798

0.607
  recA Streptococcus mutans UA159

59.599

100

0.601
  recA Streptococcus pneumoniae D39

60

99.711

0.598
  recA Streptococcus pneumoniae Rx1

60

99.711

0.598
  recA Streptococcus pneumoniae R6

60

99.711

0.598
  recA Streptococcus pneumoniae TIGR4

60

99.711

0.598
  recA Streptococcus mitis SK321

59.302

99.422

0.59
  recA Streptococcus pyogenes NZ131

62.27

94.22

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

63.043

93.064

0.587
  recA Streptococcus mitis NCTC 12261

61.728

93.642

0.578
  recA Lactococcus lactis subsp. cremoris KW2

61.111

93.642

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

94.509

0.572

Multiple sequence alignment