Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q5W_RS19290 Genome accession   NZ_CP017311
Coordinates   4052495..4053631 (-) Length   378 a.a.
NCBI ID   WP_009520700.1    Uniprot ID   A0A1L1PLC0
Organism   Hydrogenophaga sp. PBC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4047495..4058631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5W_RS19265 (Q5W_19265) - 4047744..4048529 (-) 786 WP_009520695.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  Q5W_RS19270 (Q5W_19270) sucD 4048871..4049764 (-) 894 WP_009520696.1 succinate--CoA ligase subunit alpha -
  Q5W_RS19275 (Q5W_19275) sucC 4049774..4050937 (-) 1164 WP_009520697.1 ADP-forming succinate--CoA ligase subunit beta -
  Q5W_RS19280 (Q5W_19280) argC 4051105..4052031 (+) 927 WP_009520698.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  Q5W_RS19285 (Q5W_19285) recX 4052028..4052489 (-) 462 WP_009520699.1 recombination regulator RecX -
  Q5W_RS19290 (Q5W_19290) recA 4052495..4053631 (-) 1137 WP_009520700.1 recombinase RecA Machinery gene
  Q5W_RS19295 (Q5W_19295) - 4053772..4054245 (+) 474 WP_009520701.1 MarR family transcriptional regulator -
  Q5W_RS19300 (Q5W_19300) - 4054306..4054974 (+) 669 WP_009520702.1 response regulator transcription factor -
  Q5W_RS19305 (Q5W_19305) - 4055082..4056455 (+) 1374 WP_138820202.1 sensor histidine kinase -
  Q5W_RS19310 (Q5W_19310) - 4056465..4057109 (-) 645 WP_009520704.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40178.00 Da        Isoelectric Point: 5.1050

>NTDB_id=197579 Q5W_RS19290 WP_009520700.1 4052495..4053631(-) (recA) [Hydrogenophaga sp. PBC]
MDAPVKNAALNSEKAKALQAALAQIEKQFGKGTIMKLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQRLNGTCAFVDAEHALDVQYAQKLGVNLPELLISQPDTGEQALEIVDSLVRSGAVDLVVIDSVAALTP
RAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDLGVVHRVVEKSGAWYAYNGEKIGQGRDNAREFLKE
NTQLRVEIENKVREALGVPLLAVDGTDGGAEAAAPAKGRKSKAKVDAADAAEAEAADA

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=197579 Q5W_RS19290 WP_009520700.1 4052495..4053631(-) (recA) [Hydrogenophaga sp. PBC]
ATGGACGCACCCGTGAAAAACGCCGCCCTCAACAGCGAAAAGGCCAAGGCCCTGCAAGCCGCGCTGGCCCAGATCGAAAA
ACAGTTCGGCAAGGGCACGATCATGAAGCTCGGCGAGGGCGAGGTGATCGAGGACATCCAGGTCGTCTCCACCGGTTCGC
TGGGCCTGGACATTGCGCTCGGCGTCGGTGGCCTGCCGCGGGGCCGCGTCATCGAGATCTACGGCCCGGAATCGTCCGGC
AAGACCACGCTCACCCTGCAGGTCATTGCCGAAATGCAACGCCTCAACGGCACCTGCGCCTTCGTCGACGCCGAGCACGC
GCTGGACGTGCAGTACGCGCAAAAGCTCGGCGTGAACCTGCCCGAGCTGCTCATCAGCCAGCCCGACACCGGCGAGCAGG
CGCTGGAAATCGTCGACTCGCTGGTGCGCTCGGGCGCAGTGGACCTGGTCGTCATCGACTCGGTGGCCGCGCTCACGCCC
CGTGCCGAGATCGAGGGGGAAATGGGTGACCAACTGCCCGGTCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCT
CACGGCCACCATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTCATGTTCGGCA
GCCCCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCGCCGTTCAAGACGGC
CGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCCTCGACCTGGGGGTGGTGCACCGTGTGGTCG
AGAAGTCCGGTGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCTCGCGAGTTCCTGAAGGAG
AACACCCAGTTGCGCGTCGAGATCGAAAACAAGGTGCGAGAGGCCCTGGGCGTGCCGCTGCTGGCGGTGGATGGCACTGA
CGGCGGGGCAGAGGCCGCAGCGCCGGCCAAAGGCCGCAAGTCGAAAGCCAAGGTCGACGCCGCTGACGCCGCTGAAGCCG
AAGCGGCCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L1PLC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.711

89.683

0.733
  recA Neisseria gonorrhoeae MS11

67.919

91.534

0.622
  recA Neisseria gonorrhoeae MS11

67.919

91.534

0.622
  recA Neisseria gonorrhoeae strain FA1090

67.919

91.534

0.622
  recA Pseudomonas stutzeri DSM 10701

70.948

86.508

0.614
  recA Glaesserella parasuis strain SC1401

70.988

85.714

0.608
  recA Acinetobacter baumannii D1279779

69.419

86.508

0.601
  recA Acinetobacter baylyi ADP1

69.419

86.508

0.601
  recA Vibrio cholerae strain A1552

68.485

87.302

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.485

87.302

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.782

89.683

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.455

87.302

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

86.508

0.563
  recA Helicobacter pylori strain NCTC11637

64.545

87.302

0.563
  recA Helicobacter pylori 26695

64.545

87.302

0.563
  recA Streptococcus mitis SK321

56.868

96.296

0.548
  recA Lactococcus lactis subsp. cremoris KW2

61.329

87.566

0.537
  recA Streptococcus pyogenes NZ131

60.843

87.831

0.534
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

86.243

0.532
  recA Streptococcus pneumoniae Rx1

59.76

88.095

0.526
  recA Streptococcus pneumoniae D39

59.76

88.095

0.526
  recA Streptococcus pneumoniae R6

59.76

88.095

0.526
  recA Streptococcus pneumoniae TIGR4

59.76

88.095

0.526
  recA Streptococcus mitis NCTC 12261

59.459

88.095

0.524
  recA Streptococcus mutans UA159

59.459

88.095

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.308

85.979

0.519

Multiple sequence alignment