Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BHY08_RS02445 Genome accession   NZ_CP017267
Coordinates   510273..511331 (+) Length   352 a.a.
NCBI ID   WP_071456359.1    Uniprot ID   A0A1J0A4E6
Organism   Vagococcus teuberi strain DSM 21459     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 505273..516331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHY08_RS02420 (BHY08_02420) - 505610..505903 (+) 294 WP_071456354.1 hypothetical protein -
  BHY08_RS02425 (BHY08_02425) - 506000..507208 (+) 1209 WP_071456355.1 NAD(P)/FAD-dependent oxidoreductase -
  BHY08_RS02430 (BHY08_02430) sdaAA 507272..508141 (-) 870 WP_071456356.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  BHY08_RS02435 (BHY08_02435) sdaAB 508155..508814 (-) 660 WP_071456357.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  BHY08_RS02440 (BHY08_02440) - 508959..510173 (+) 1215 WP_071456358.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  BHY08_RS02445 (BHY08_02445) recA 510273..511331 (+) 1059 WP_071456359.1 recombinase RecA Machinery gene
  BHY08_RS02450 (BHY08_02450) rny 511575..513131 (+) 1557 WP_071456360.1 ribonuclease Y -
  BHY08_RS02455 (BHY08_02455) nrdD 513396..515558 (+) 2163 WP_420855335.1 anaerobic ribonucleoside-triphosphate reductase -
  BHY08_RS02460 (BHY08_02460) nrdG 515603..516181 (+) 579 WP_071456362.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38000.03 Da        Isoelectric Point: 4.7954

>NTDB_id=197091 BHY08_RS02445 WP_071456359.1 510273..511331(+) (recA) [Vagococcus teuberi strain DSM 21459]
MSDNRKAALDAALKKIEKDFGKGSVMKLGEKVDTQISTVSSGSLALDSALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
SVQKAGGTAAFIDAEHALDPKYASALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFRIAEVDIMYGEGISQEGELLDMAADKDIVNKSGAWYSYEEERIGQGRENAKKYLTDHPEMREEIYQ
KVRLAYNMDGVSPEEATEENEKTEEVSLDLED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=197091 BHY08_RS02445 WP_071456359.1 510273..511331(+) (recA) [Vagococcus teuberi strain DSM 21459]
ATGTCAGATAATCGTAAAGCAGCTTTAGATGCTGCCTTAAAAAAAATAGAAAAAGATTTTGGGAAAGGTTCAGTGATGAA
ACTAGGTGAAAAAGTTGATACTCAGATTTCGACTGTTTCAAGTGGTTCTCTTGCCCTAGACTCAGCTTTAGGAGTTGGTG
GGTACCCACGAGGTAGAATCATTGAAGTATATGGCCCAGAAAGTTCAGGAAAAACAACGGTTGCATTGCATGCTATTGCC
TCAGTACAAAAAGCAGGGGGAACAGCAGCGTTTATCGATGCTGAGCATGCTTTAGATCCAAAATATGCGAGTGCCTTAGG
AGTCAACATTGATGAGCTTCTTTTATCACAGCCGGATACTGGAGAACAAGGGCTAAACATTGCTGAAGCACTTGTTTCAA
GTGGAGCAATTGATATTGTTGTTGTTGATTCAGTAGCTGCTTTAGTACCAAGAGCTGAGATTGATGGTGAAATGGGAGAT
TCTCATGTGGGTCTTCAAGCACGTTTGATGTCACAAGCGTTGAGAAAATTATCTGGAACAATTAATAAAACAAAAACAAT
TGCGATATTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACAACTCCTGGAGGACGAGCAT
TGAAATTTTACGCAACTGTTCGTTTGGAAGTTCGTAGAGCAGAACAATTAAAATCAGGAACAGATATTATTGGTAATAGA
ACGAAAATTAAAGTAGTTAAAAATAAAGTAGCGCCACCATTTAGAATTGCTGAAGTTGATATCATGTATGGTGAAGGAAT
CTCTCAAGAGGGGGAACTACTGGATATGGCTGCTGATAAGGACATCGTCAACAAAAGTGGTGCATGGTATTCTTATGAAG
AAGAACGTATCGGTCAAGGACGCGAGAATGCGAAGAAATATCTGACAGATCATCCAGAAATGAGAGAAGAAATTTATCAA
AAAGTTCGTCTAGCATATAATATGGATGGAGTTTCACCAGAAGAAGCGACCGAAGAAAATGAAAAAACTGAAGAAGTATC
ATTAGATTTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0A4E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.409

97.159

0.781
  recA Bacillus subtilis subsp. subtilis str. 168

79.939

93.466

0.747
  recA Streptococcus pneumoniae TIGR4

69.337

100

0.713
  recA Streptococcus pneumoniae D39

69.337

100

0.713
  recA Streptococcus pneumoniae R6

69.337

100

0.713
  recA Streptococcus pneumoniae Rx1

69.337

100

0.713
  recA Streptococcus mitis SK321

69.167

100

0.707
  recA Streptococcus mitis NCTC 12261

69.553

100

0.707
  recA Streptococcus pyogenes NZ131

69.274

100

0.705
  recA Streptococcus mutans UA159

69.209

100

0.696
  recA Lactococcus lactis subsp. cremoris KW2

70.122

93.182

0.653
  recA Ralstonia pseudosolanacearum GMI1000

59.887

100

0.602
  recA Acinetobacter baylyi ADP1

61.404

97.159

0.597
  recA Glaesserella parasuis strain SC1401

60.756

97.727

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

93.466

0.594
  recA Neisseria gonorrhoeae MS11

63.889

92.045

0.588
  recA Neisseria gonorrhoeae MS11

63.889

92.045

0.588
  recA Neisseria gonorrhoeae strain FA1090

63.889

92.045

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.975

91.477

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.058

97.443

0.585
  recA Pseudomonas stutzeri DSM 10701

58.239

100

0.582
  recA Helicobacter pylori 26695

58.841

98.011

0.577
  recA Helicobacter pylori strain NCTC11637

58.841

98.011

0.577
  recA Acinetobacter baumannii D1279779

62.539

91.761

0.574
  recA Vibrio cholerae strain A1552

61.3

91.761

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

91.761

0.562

Multiple sequence alignment