Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BC336_RS02600 Genome accession   NZ_CP017235
Coordinates   493033..494142 (+) Length   369 a.a.
NCBI ID   WP_011678076.1    Uniprot ID   A0AAV5PB41
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain L99     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 488033..499142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC336_RS02580 (BC336_0529) - 489018..490271 (+) 1254 WP_114893839.1 pitrilysin family protein -
  BC336_RS02585 (BC336_0530) - 490268..490996 (+) 729 WP_003618894.1 SDR family NAD(P)-dependent oxidoreductase -
  BC336_RS02590 (BC336_0531) - 491065..492219 (+) 1155 WP_114893840.1 helix-turn-helix transcriptional regulator -
  BC336_RS02595 (BC336_0532) pgsA 492264..492827 (+) 564 WP_002877019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BC336_RS02600 (BC336_0533) recA 493033..494142 (+) 1110 WP_011678076.1 recombinase RecA Machinery gene
  BC336_RS02605 (BC336_0534) rny 494293..495933 (+) 1641 WP_035169618.1 ribonuclease Y -
  BC336_RS02610 (BC336_0535) - 496037..497236 (+) 1200 WP_003622679.1 MraY family glycosyltransferase -
  BC336_RS02615 (BC336_0536) - 497289..497948 (-) 660 WP_003622681.1 YigZ family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39699.15 Da        Isoelectric Point: 5.4047

>NTDB_id=196763 BC336_RS02600 WP_011678076.1 493033..494142(+) (recA) [Lactobacillus delbrueckii subsp. bulgaricus strain L99]
MAKDEKKAALEAALKKIEKNFGKGAVMRMGEKVDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGN
RVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGRENAKKYLEEHPDVSEDIQ
TQVRKAYGIDAESLEEKEDPEKVKEQRAKKAAPGEEKPAEPASPEKTDK

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=196763 BC336_RS02600 WP_011678076.1 493033..494142(+) (recA) [Lactobacillus delbrueckii subsp. bulgaricus strain L99]
TTGGCTAAAGATGAAAAAAAAGCGGCTCTTGAAGCGGCTTTAAAGAAAATTGAAAAGAACTTCGGTAAAGGCGCGGTCAT
GCGGATGGGCGAGAAGGTCGACACCCAGATCTCGACTGTTCCGTCAGGCTCACTGGCACTGGACGCGGCCTTGGGCGTGG
GCGGCTACCCGCGGGGCCGGATCGTGGAAATCTACGGGCCGGAATCTTCCGGTAAGACGACCGTTGCCCTGCACGCCGTA
GCTGAAGTGCAGAAGCGGGGCGGCACGGCGGCCTACATCGACGCGGAAAACGCCATGGACCCGGCTTACGCTGAAGCCTT
GGGCGTGGACATCGACCAATTGATCCTGTCTCAGCCAAACACTGGGGAAGAAGGGCTGCAAATCGCGGACACCTTGATCT
CCAGCGGGGCCATCGACATCGTCGTGGTCGACTCCGTTGCCGCCCTGGTGCCGCGGGCCGAAATCGAAGGTGAAATGGGT
GACTCCCACGTTGGACTCCAGGCCCGCCTGATGAGCCAGGCCTTGCGCAAGCTCTCCGGGACGATTGCCAAGACCAAGAC
CATTGCCATCTTCATCAACCAGATCCGGGAAAAGGTCGGCGTCATGTTTGGTAATCCCGAAACCACCCCAGGTGGTCGGG
CGCTGAAGTTCTACTCAACCATCCGGCTGGAAGTCCGCCGGGCGGAACAGATCAAGCAGTCCACCAACGTTATCGGTAAC
CGGGTCAAGATCAAAGTGGTCAAGAACAAGGTTGCTCCGCCATTTAAGGTAGCTGAAGTCGACATCATGTACGGGCAGGG
GATCTCCCAGTCCGGCGAACTGCTGGACATGGCTGCTGACCAGGACATCGTCGACAAGGCCGGGGCCTGGTACTCCTACC
ACGGTGAAAAGATCGGCCAGGGCCGGGAAAACGCCAAGAAGTACCTGGAGGAACACCCGGACGTTTCCGAGGACATCCAG
ACCCAGGTCCGCAAGGCTTACGGAATCGATGCTGAATCTCTGGAAGAAAAGGAAGATCCGGAGAAGGTCAAGGAGCAGCG
GGCTAAGAAGGCAGCTCCTGGCGAAGAGAAGCCAGCAGAGCCGGCAAGTCCGGAAAAGACTGATAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.371

89.16

0.734
  recA Streptococcus pneumoniae TIGR4

67.131

97.29

0.653
  recA Streptococcus pneumoniae Rx1

67.131

97.29

0.653
  recA Streptococcus pneumoniae D39

67.131

97.29

0.653
  recA Streptococcus pneumoniae R6

67.131

97.29

0.653
  recA Streptococcus mutans UA159

67.989

95.664

0.65
  recA Bacillus subtilis subsp. subtilis str. 168

73.313

88.347

0.648
  recA Streptococcus mitis NCTC 12261

68.222

92.954

0.634
  recA Streptococcus mitis SK321

68.129

92.683

0.631
  recA Streptococcus pyogenes NZ131

70.213

89.16

0.626
  recA Lactococcus lactis subsp. cremoris KW2

67.781

89.16

0.604
  recA Acinetobacter baylyi ADP1

59.767

92.954

0.556
  recA Neisseria gonorrhoeae strain FA1090

60.831

91.328

0.556
  recA Neisseria gonorrhoeae MS11

60.831

91.328

0.556
  recA Neisseria gonorrhoeae MS11

60.831

91.328

0.556
  recA Acinetobacter baumannii D1279779

58.79

94.038

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

88.889

0.547
  recA Helicobacter pylori 26695

56.725

92.683

0.526
  recA Helicobacter pylori strain NCTC11637

56.725

92.683

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

89.16

0.52
  recA Pseudomonas stutzeri DSM 10701

59.813

86.992

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

87.534

0.518
  recA Glaesserella parasuis strain SC1401

56.798

89.702

0.509
  recA Ralstonia pseudosolanacearum GMI1000

60.064

84.824

0.509
  recA Vibrio cholerae strain A1552

58.385

87.263

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.385

87.263

0.509

Multiple sequence alignment