Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BHS01_RS09915 Genome accession   NZ_CP017195
Coordinates   2027801..2028970 (-) Length   389 a.a.
NCBI ID   WP_109835404.1    Uniprot ID   A0A7L4WFV5
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022801..2033970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS09885 (BHS01_09890) - 2023295..2023885 (-) 591 WP_109835399.1 DUF1349 domain-containing protein -
  BHS01_RS09890 (BHS01_09895) - 2023916..2024554 (-) 639 WP_162542464.1 GNAT family N-acetyltransferase -
  BHS01_RS09895 (BHS01_09900) - 2024815..2025474 (-) 660 WP_109835401.1 hypothetical protein -
  BHS01_RS09900 (BHS01_09905) - 2025559..2026218 (+) 660 WP_109835402.1 cyclic nucleotide-binding domain-containing protein -
  BHS01_RS09905 (BHS01_09910) - 2026476..2026970 (-) 495 WP_109835403.1 HdeD family acid-resistance protein -
  BHS01_RS09910 (BHS01_09915) spx 2027197..2027595 (-) 399 WP_047916282.1 transcriptional regulator Spx -
  BHS01_RS09915 (BHS01_09920) recA 2027801..2028970 (-) 1170 WP_109835404.1 recombinase RecA Machinery gene
  BHS01_RS09920 (BHS01_09925) mutM 2029144..2029977 (-) 834 WP_109835405.1 DNA-formamidopyrimidine glycosylase -
  BHS01_RS09925 (BHS01_09930) - 2030135..2031568 (+) 1434 WP_109835406.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  BHS01_RS09930 (BHS01_09935) hslO 2031791..2032663 (+) 873 WP_109835407.1 Hsp33 family molecular chaperone HslO -
  BHS01_RS09935 (BHS01_09940) dusB 2032653..2033642 (+) 990 WP_109835408.1 tRNA dihydrouridine synthase DusB -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 41849.00 Da        Isoelectric Point: 5.7944

>NTDB_id=196590 BHS01_RS09915 WP_109835404.1 2027801..2028970(-) (recA) [Lactococcus paracarnosus strain TMW 2.1615]
MAKKVKKNLDDITKKFGDEREKALNDALKIIEKDFGKGALMRLGDKAEQKVQVMSSGSLALDIALGVGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GNTQIKGTGEDKDTAMGKETKIKVVKNKVAPPFKVAEVEIMFGEGISQTGELVKIATDLDIIKKSGAWFAYNDEKIGQGS
EKAKLYLKEHPEVFQEIDHKVRKHFGLIPEAAASDKSNEKPAAKATKENPKVSEPELVSLELDTIEIEE

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=196590 BHS01_RS09915 WP_109835404.1 2027801..2028970(-) (recA) [Lactococcus paracarnosus strain TMW 2.1615]
TTGGCAAAAAAAGTTAAAAAAAATCTAGATGATATTACTAAAAAATTCGGTGATGAGCGTGAGAAAGCACTTAATGACGC
GCTTAAAATTATTGAAAAAGATTTCGGAAAAGGCGCACTGATGCGTCTTGGTGATAAGGCAGAGCAAAAAGTACAAGTTA
TGAGTTCAGGGTCATTAGCACTAGATATCGCCTTGGGTGTTGGTGGCTATCCTAAAGGACGGATCATCGAAATTTACGGA
CCTGAGTCCTCAGGTAAAACGACCGTTGCGCTTCATGCGGTTGCACAAGCACAAAAAGAAGGTGGTATTGCAGCATTTAT
CGATGCAGAGCATGCACTTGATCCAGCCTATGCAGCAGCACTTGGTGTTAACATAGACGAGTTATTACTATCACAACCAG
ATTCTGGGGAGCAAGGTCTTGAAATCGCTGGTAAGCTGATCGATTCAGGTGCGATCGATTTAGTAGTTATTGACTCAGTA
GCCGCACTTGTACCACGTGCAGAAATTGATGGGGACATCGGTGATTCTCACGTTGGACTTCAAGCACGTATGATGTCCCA
AGCCATGCGTAAACTATCATCATCTATCAATAAAACAAAAACAATCGCGATTTTCATCAACCAATTGCGTGAAAAAGTCG
GTGTTATGTTTGGTAGTCCAGAAACAACACCCGGTGGTCGTGCCTTGAAGTTTTATGCCTCAGTTCGTCTAGATGTCCGT
GGTAATACACAGATTAAAGGAACCGGTGAAGATAAAGACACAGCGATGGGTAAAGAAACCAAAATTAAGGTTGTCAAAAA
TAAAGTTGCACCACCATTCAAAGTGGCAGAAGTTGAGATTATGTTTGGTGAGGGAATTTCACAAACAGGAGAACTTGTCA
AAATTGCAACTGATTTAGACATTATCAAAAAATCTGGTGCTTGGTTTGCCTACAACGATGAAAAAATTGGACAAGGGTCT
GAAAAAGCTAAATTATATTTAAAAGAGCATCCTGAAGTATTCCAGGAGATAGACCATAAAGTTCGCAAACACTTTGGCCT
GATTCCTGAAGCAGCAGCCTCAGATAAATCAAATGAAAAACCTGCAGCAAAGGCGACTAAAGAAAATCCTAAAGTTTCAG
AGCCAGAGCTTGTATCATTAGAGTTAGATACGATAGAGATAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L4WFV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

82.564

100

0.828
  recA Streptococcus mitis SK321

82.308

100

0.825
  recA Streptococcus pneumoniae TIGR4

82.097

100

0.825
  recA Streptococcus pneumoniae Rx1

82.097

100

0.825
  recA Streptococcus pneumoniae R6

82.097

100

0.825
  recA Streptococcus pneumoniae D39

82.097

100

0.825
  recA Streptococcus mutans UA159

81.026

100

0.812
  recA Streptococcus pyogenes NZ131

88.728

88.946

0.789
  recA Lactococcus lactis subsp. cremoris KW2

80.627

90.231

0.728
  recA Latilactobacillus sakei subsp. sakei 23K

68.657

86.118

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

84.576

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.345

89.46

0.54
  recA Neisseria gonorrhoeae MS11

60.345

89.46

0.54
  recA Neisseria gonorrhoeae MS11

60.345

89.46

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

83.033

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.048

85.347

0.53
  recA Acinetobacter baylyi ADP1

58.621

89.46

0.524
  recA Glaesserella parasuis strain SC1401

54.595

95.116

0.519
  recA Vibrio cholerae strain A1552

59.459

85.604

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.459

85.604

0.509
  recA Acinetobacter baumannii D1279779

60.061

84.319

0.506
  recA Helicobacter pylori strain NCTC11637

59.091

84.833

0.501
  recA Helicobacter pylori 26695

59.091

84.833

0.501
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

85.09

0.499
  recA Ralstonia pseudosolanacearum GMI1000

58.642

83.29

0.488
  recA Pseudomonas stutzeri DSM 10701

58.154

83.548

0.486

Multiple sequence alignment