Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BHS00_RS00955 Genome accession   NZ_CP017194
Coordinates   187703..188872 (+) Length   389 a.a.
NCBI ID   WP_079507532.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 182703..193872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS00935 (BHS00_00925) dusB 182988..183977 (-) 990 WP_079507540.1 tRNA dihydrouridine synthase DusB -
  BHS00_RS00940 (BHS00_00930) hslO 183967..184839 (-) 873 WP_079507538.1 Hsp33 family molecular chaperone HslO -
  BHS00_RS00945 (BHS00_00935) - 185053..186485 (-) 1433 Protein_160 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  BHS00_RS00950 (BHS00_00940) mutM 186696..187529 (+) 834 WP_079507534.1 DNA-formamidopyrimidine glycosylase -
  BHS00_RS00955 (BHS00_00945) recA 187703..188872 (+) 1170 WP_079507532.1 recombinase RecA Machinery gene
  BHS00_RS00960 (BHS00_00950) spx 189079..189477 (+) 399 WP_047916282.1 transcriptional regulator Spx -
  BHS00_RS00965 (BHS00_00955) - 189678..190199 (+) 522 WP_079507530.1 HdeD family acid-resistance protein -
  BHS00_RS00970 (BHS00_00960) - 190457..191116 (-) 660 WP_079507528.1 cyclic nucleotide-binding domain-containing protein -
  BHS00_RS00975 (BHS00_00965) - 191201..191860 (+) 660 WP_079507526.1 YczE/YyaS/YitT family protein -
  BHS00_RS00980 (BHS00_00970) - 192124..192762 (+) 639 WP_191245654.1 GNAT family N-acetyltransferase -
  BHS00_RS00985 (BHS00_00975) - 192794..193384 (+) 591 WP_079507522.1 DUF1349 domain-containing protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 41884.04 Da        Isoelectric Point: 5.7961

>NTDB_id=196521 BHS00_RS00955 WP_079507532.1 187703..188872(+) (recA) [Lactococcus carnosus strain TMW 2.1612]
MAKKVKKNLDDITKKFGDEREKALNDALKIIEKDFGKGALMRLGDKAEQKVQVMSSGSLALDIALGVGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSV
AALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GNTQIKGTGEDKDTAMGKETKIKVVKNKVAPPFKVAEVEIMFGEGISQTGELVKIATDLDIIKKSGAWFAYNDEKIGQGS
EKAKLYLKEHPEVFQEIDHKVRKHFGLIPEAAASDKSNEKSVAKATKETPKVSEPELVSLELDTIEIEE

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=196521 BHS00_RS00955 WP_079507532.1 187703..188872(+) (recA) [Lactococcus carnosus strain TMW 2.1612]
TTGGCAAAAAAAGTTAAAAAAAATCTAGATGATATTACTAAAAAATTCGGTGATGAGCGTGAGAAAGCACTCAATGACGC
ACTGAAAATTATTGAAAAAGATTTCGGAAAAGGCGCATTGATGCGTCTTGGTGATAAAGCAGAGCAAAAAGTGCAAGTCA
TGAGTTCAGGGTCATTGGCCCTTGATATTGCCTTAGGCGTTGGTGGCTATCCTAAAGGACGGATCATCGAGATTTATGGA
CCAGAGTCTTCAGGTAAAACAACTGTTGCGCTTCATGCGGTTGCGCAAGCACAAAAAGAAGGTGGTATTGCAGCATTTAT
CGATGCAGAGCATGCACTTGATCCAGCCTATGCAGCATCACTCGGCGTGAACATAGACGAGTTATTGCTATCGCAACCAG
ACTCTGGGGAGCAAGGTCTTGAAATCGCTGGTAAACTGATTGATTCAGGCGCTATCGATTTAGTGGTTATTGACTCAGTA
GCTGCACTTGTACCACGTGCAGAAATTGATGGTGAAATCGGTGATTCTCACGTCGGACTGCAGGCGCGTATGATGTCTCA
AGCCATGCGTAAACTCTCATCATCTATCAATAAGACAAAAACAATCGCGATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTTATGTTTGGTAGTCCAGAAACAACACCTGGTGGTCGTGCCTTGAAGTTTTATGCGTCAGTTCGTTTAGATGTCCGT
GGTAATACACAGATTAAAGGAACCGGTGAAGATAAAGATACAGCAATGGGTAAAGAAACCAAGATTAAGGTTGTCAAAAA
TAAAGTTGCACCACCATTTAAAGTGGCAGAAGTTGAGATTATGTTTGGTGAGGGTATTTCACAAACAGGAGAACTTGTCA
AAATTGCAACTGATTTAGACATCATCAAAAAATCTGGTGCTTGGTTTGCCTATAATGATGAAAAAATTGGACAAGGCTCA
GAAAAAGCTAAGTTATACTTAAAAGAACATCCAGAAGTATTCCAGGAGATAGACCATAAAGTTCGGAAACACTTTGGCCT
GATTCCTGAAGCTGCAGCCTCAGATAAGTCAAACGAAAAATCTGTAGCAAAGGCGACTAAAGAAACCCCTAAAGTTTCAG
AGCCAGAGCTTGTATCACTAGAATTAGATACGATAGAGATAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R6

81.586

100

0.82
  recA Streptococcus pneumoniae TIGR4

81.586

100

0.82
  recA Streptococcus pneumoniae Rx1

81.586

100

0.82
  recA Streptococcus pneumoniae D39

81.586

100

0.82
  recA Streptococcus mitis SK321

81.795

100

0.82
  recA Streptococcus pyogenes NZ131

81.282

100

0.815
  recA Streptococcus mitis NCTC 12261

81.282

100

0.815
  recA Streptococcus mutans UA159

80.769

100

0.81
  recA Lactococcus lactis subsp. cremoris KW2

80.627

90.231

0.728
  recA Latilactobacillus sakei subsp. sakei 23K

68.657

86.118

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

67.477

84.576

0.571
  recA Neisseria gonorrhoeae strain FA1090

61.934

85.09

0.527
  recA Neisseria gonorrhoeae MS11

61.934

85.09

0.527
  recA Neisseria gonorrhoeae MS11

61.934

85.09

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.747

85.347

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

83.033

0.524
  recA Acinetobacter baylyi ADP1

56.863

91.774

0.522
  recA Glaesserella parasuis strain SC1401

54.595

95.116

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.76

85.604

0.512
  recA Vibrio cholerae strain A1552

59.76

85.604

0.512
  recA Acinetobacter baumannii D1279779

60.366

84.319

0.509
  recA Helicobacter pylori strain NCTC11637

58.788

84.833

0.499
  recA Helicobacter pylori 26695

58.788

84.833

0.499
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.308

85.09

0.496
  recA Ralstonia pseudosolanacearum GMI1000

58.951

83.29

0.491
  recA Pseudomonas stutzeri DSM 10701

58.462

83.548

0.488

Multiple sequence alignment