Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BHS08_RS07250 Genome accession   NZ_CP017173
Coordinates   1708145..1709173 (-) Length   342 a.a.
NCBI ID   WP_140788487.1    Uniprot ID   -
Organism   Myxococcus xanthus strain MC3.3.5c16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703145..1714173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS08_RS07230 (BHS08_07100) pssA 1703812..1704678 (+) 867 WP_140788481.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  BHS08_RS07235 (BHS08_07105) - 1704790..1706055 (+) 1266 WP_140788482.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  BHS08_RS07240 (BHS08_07110) - 1706052..1707581 (+) 1530 WP_140788484.1 hypothetical protein -
  BHS08_RS07245 (BHS08_07115) - 1707639..1708148 (+) 510 WP_174259994.1 DUF1285 domain-containing protein -
  BHS08_RS07250 (BHS08_07120) recA 1708145..1709173 (-) 1029 WP_140788487.1 recombinase RecA Machinery gene
  BHS08_RS07255 (BHS08_07125) - 1709466..1710842 (+) 1377 WP_140788488.1 NAD(P)/FAD-dependent oxidoreductase -
  BHS08_RS07260 (BHS08_07130) - 1710858..1712501 (-) 1644 WP_140788490.1 YifB family Mg chelatase-like AAA ATPase -
  BHS08_RS07265 (BHS08_07135) - 1712700..1713374 (+) 675 WP_140788492.1 hypothetical protein -
  BHS08_RS07270 (BHS08_07140) - 1713275..1713898 (-) 624 WP_140788493.1 DUF2378 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36029.32 Da        Isoelectric Point: 7.5189

>NTDB_id=196297 BHS08_RS07250 WP_140788487.1 1708145..1709173(-) (recA) [Myxococcus xanthus strain MC3.3.5c16]
MSKLAEKLKAVAAAVASIEKQFGRGSVMTLGGEAREQKVAVIPSGSVGVDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQPDTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVV
GSKARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSHFSLRGERIGQGRERAAEWLREHPDVLEA
LGKEITGTSALPSSPAPVEVAA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=196297 BHS08_RS07250 WP_140788487.1 1708145..1709173(-) (recA) [Myxococcus xanthus strain MC3.3.5c16]
ATGAGCAAGCTGGCGGAGAAGCTGAAGGCGGTGGCGGCGGCGGTAGCGAGCATCGAGAAGCAGTTCGGACGAGGCTCGGT
GATGACGTTGGGCGGGGAAGCGCGCGAACAAAAGGTCGCCGTCATCCCCTCCGGCTCGGTGGGAGTGGACCGCGCGCTGG
GCGTGGGCGGCTATCCGCGGGGCCGCGTGGTGGAGGTCTTCGGGAACGAGTCCTCGGGCAAGACGACGCTCACCCTGCAT
GCGATTGCCCAGGTGCAGGCGGCGGGAGGCGTGGCGGCCTTCATCGACGCGGAGCACGCGCTGGACGTGTCCTACGCGCG
AAAGCTGGGCGTCCGTGTGGAGGAATTGCTCGTGTCGCAGCCCGACACCGGCGAACAGGCGCTGGAAATCACCGAGCACC
TGGTGCGCTCCGGCGCGGTGGACCTCATCGTCGTCGACTCGGTGGCGGCCCTGGTGCCGCGGGCCGAAATCGAGGGCGAG
ATGGGGGACGCGCACATGGGCGTCCAGGCGAGGCTGATGAGTCAGGCGCTGCGCAAGCTGACAGGCGCGGTGAGCCGCTC
GGGCACGTGCATCATCTTCATCAACCAGATTCGGATGAAGATTGGCGTGATGTTCGGCAATCCGGAAACCACCACCGGTG
GCAATGCGCTGAAGTTCTACGCATCCGTGCGGATGGAGATTCGCCGCACGGGCAACATCAAGGACGGTGATGCCGTCGTG
GGCTCGAAGGCCCGAGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCCTTCCAGGAAGCGGAGTTCGACCTCATGTACGG
CAGCGGCATCCACCGCGTGGGGGAAGTGCTCGACCTCGGCGTGGCCACGGGCCTCATCGAGAAGTCGGGGAGCCACTTCA
GCCTGCGCGGAGAGCGCATCGGCCAGGGCCGGGAGCGCGCCGCCGAGTGGCTGCGCGAACATCCAGACGTGCTGGAAGCG
CTGGGCAAGGAGATTACGGGGACTTCCGCCCTGCCCTCCTCGCCCGCGCCTGTGGAGGTCGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.01

91.52

0.632
  recA Pseudomonas stutzeri DSM 10701

65.312

93.567

0.611
  recA Glaesserella parasuis strain SC1401

62.462

97.368

0.608
  recA Vibrio cholerae strain A1552

64.263

93.275

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.263

93.275

0.599
  recA Neisseria gonorrhoeae MS11

63.75

93.567

0.596
  recA Neisseria gonorrhoeae strain FA1090

63.75

93.567

0.596
  recA Neisseria gonorrhoeae MS11

63.75

93.567

0.596
  recA Acinetobacter baylyi ADP1

61.261

97.368

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

94.152

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

59.403

97.953

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.923

95.029

0.579
  recA Acinetobacter baumannii D1279779

61.755

93.275

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.752

94.444

0.564
  recA Helicobacter pylori 26695

59.006

94.152

0.556
  recA Helicobacter pylori strain NCTC11637

59.006

94.152

0.556
  recA Lactococcus lactis subsp. cremoris KW2

57.1

96.784

0.553
  recA Streptococcus pneumoniae Rx1

58.154

95.029

0.553
  recA Streptococcus pneumoniae D39

58.154

95.029

0.553
  recA Streptococcus pneumoniae R6

58.154

95.029

0.553
  recA Streptococcus pneumoniae TIGR4

58.154

95.029

0.553
  recA Streptococcus mitis SK321

57.231

95.029

0.544
  recA Streptococcus pyogenes NZ131

57.407

94.737

0.544
  recA Streptococcus mitis NCTC 12261

56.923

95.029

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.786

91.52

0.538
  recA Streptococcus mutans UA159

56.481

94.737

0.535

Multiple sequence alignment