Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BHS04_RS06940 Genome accession   NZ_CP017169
Coordinates   1611455..1612546 (+) Length   363 a.a.
NCBI ID   WP_140788397.1    Uniprot ID   -
Organism   Myxococcus xanthus strain GH3.5.6c2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606455..1617546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS04_RS06920 (BHS04_06745) glmU 1606997..1608409 (+) 1413 WP_418764036.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BHS04_RS06925 (BHS04_06750) glmS 1608517..1610352 (+) 1836 WP_140788393.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  BHS04_RS06935 (BHS04_06755) - 1610629..1611342 (+) 714 WP_237081038.1 hypothetical protein -
  BHS04_RS06940 (BHS04_06760) recA 1611455..1612546 (+) 1092 WP_140788397.1 recombinase RecA Machinery gene
  BHS04_RS06945 (BHS04_06765) - 1612711..1614939 (+) 2229 WP_140853281.1 alkaline phosphatase D family protein -
  BHS04_RS06950 (BHS04_06770) - 1615061..1615618 (+) 558 WP_140788401.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39018.76 Da        Isoelectric Point: 6.8710

>NTDB_id=196248 BHS04_RS06940 WP_140788397.1 1611455..1612546(+) (recA) [Myxococcus xanthus strain GH3.5.6c2]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAIPTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGRENVKDYLREHPEIAK
DIEGRVLEKYGIGKSGAPVAAVPDESAPAEGGSEKRGRVKAVK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=196248 BHS04_RS06940 WP_140788397.1 1611455..1612546(+) (recA) [Myxococcus xanthus strain GH3.5.6c2]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAACTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCGCTGATGCGAGACGTTCAGGCCATCCCGACGGGCTCCATCTCGCTGGACATCGCCC
TGGGCGTGGGTGGCGTGCCCAAGGGCCGCATCATCGAAATCTTCGGGCCGGAGTCGTCCGGTAAGACGACGCTGTGTCTC
CACATCGTCGCCGAGGCGCAGAAGCGCGGCGGCATCTGCGGCTACGTGGACGCGGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGATGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCGGAGA
TGCTGGTGCGCTCGGGCGCCATCGATGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAACTCGAGGGT
GAGATGGGCGACGCGCACATGGGTGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTGACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACCACGG
GCGGTAACGCGCTGAAGTTCTACGCGTCGCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAATGGCGACAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCGCCGTTCAAGGAAGTCGAGTTCGACATCATGTA
CGGCACGGGCATCTCCCGTGAGGGCGACCTCATCGACCTCGCCTCCAACGAGAACATCGTGGAGAAGAGCGGCAGCTGGT
TCTCCTTCAATGGTGAGCGCATCGGCCAGGGCCGGGAGAACGTGAAGGACTACCTGCGCGAGCACCCGGAGATTGCCAAG
GACATCGAAGGCCGCGTGCTGGAGAAGTACGGCATCGGCAAGTCGGGTGCGCCCGTCGCCGCGGTGCCGGACGAGTCCGC
GCCGGCCGAAGGTGGCAGCGAGAAGCGCGGCCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.827

89.256

0.614
  recA Pseudomonas stutzeri DSM 10701

62.678

96.694

0.606
  recA Acinetobacter baumannii D1279779

63.112

95.592

0.603
  recA Acinetobacter baylyi ADP1

62.428

95.317

0.595
  recA Vibrio cholerae strain A1552

65.951

89.807

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

89.807

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

61.224

94.49

0.579
  recA Helicobacter pylori strain NCTC11637

60.405

95.317

0.576
  recA Glaesserella parasuis strain SC1401

64.907

88.705

0.576
  recA Neisseria gonorrhoeae strain FA1090

64.506

89.256

0.576
  recA Neisseria gonorrhoeae MS11

64.506

89.256

0.576
  recA Neisseria gonorrhoeae MS11

64.506

89.256

0.576
  recA Helicobacter pylori 26695

59.827

95.317

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

91.185

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

61.934

91.185

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.272

89.256

0.565
  recA Streptococcus pneumoniae D39

61.329

91.185

0.559
  recA Streptococcus pneumoniae Rx1

61.329

91.185

0.559
  recA Streptococcus pneumoniae R6

61.329

91.185

0.559
  recA Streptococcus pneumoniae TIGR4

61.329

91.185

0.559
  recA Streptococcus mitis NCTC 12261

60.121

91.185

0.548
  recA Streptococcus mitis SK321

59.819

91.185

0.545
  recA Streptococcus pyogenes NZ131

60

90.909

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

91.185

0.543
  recA Streptococcus mutans UA159

58.912

91.185

0.537
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.185

0.529

Multiple sequence alignment