Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EnteroDNA1_RS09260 Genome accession   NZ_CP017087
Coordinates   1963178..1964236 (-) Length   352 a.a.
NCBI ID   WP_023308943.1    Uniprot ID   A0A1Z3MZ79
Organism   Enterobacter sp. HK169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958178..1969236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EnteroDNA1_RS09245 (EnteroDNA1_01840) csrA 1959423..1959608 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  EnteroDNA1_RS09250 (EnteroDNA1_01841) alaS 1959850..1962477 (-) 2628 WP_045888112.1 alanine--tRNA ligase -
  EnteroDNA1_RS09255 (EnteroDNA1_01842) recX 1962609..1963109 (-) 501 WP_069303221.1 recombination regulator RecX -
  EnteroDNA1_RS09260 (EnteroDNA1_01843) recA 1963178..1964236 (-) 1059 WP_023308943.1 recombinase RecA Machinery gene
  EnteroDNA1_RS09265 (EnteroDNA1_01844) pncC 1964326..1964823 (-) 498 WP_023308944.1 nicotinamide-nucleotide amidase -
  EnteroDNA1_RS09270 (EnteroDNA1_01845) - 1964952..1965830 (-) 879 WP_069303222.1 metal ABC transporter substrate-binding protein -
  EnteroDNA1_RS09275 (EnteroDNA1_01846) - 1965845..1966705 (-) 861 WP_039263400.1 metal ABC transporter permease -
  EnteroDNA1_RS09280 (EnteroDNA1_01847) - 1966702..1967355 (-) 654 WP_069303223.1 ATP-binding cassette domain-containing protein -
  EnteroDNA1_RS09285 (EnteroDNA1_01848) mltB 1967625..1968725 (-) 1101 WP_170864504.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37832.29 Da        Isoelectric Point: 4.8134

>NTDB_id=195354 EnteroDNA1_RS09260 WP_023308943.1 1963178..1964236(-) (recA) [Enterobacter sp. HK169]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=195354 EnteroDNA1_RS09260 WP_023308943.1 1963178..1964236(-) (recA) [Enterobacter sp. HK169]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CTGGCGGTCTGCCTATGGGCCGTATCGTAGAAATCTACGGGCCAGAGTCCTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATTGCTGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCTGTTTATGCCCGCAA
GCTGGGCGTGGATATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGTTCTGGTGCCGTTGACGTTATCGTGGTCGACTCCGTTGCCGCACTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGTGACTCTCATATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATTCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCACTGAAATTCTACGCCTCTGTCCGTCTGGATATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTAGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATTGCTGCGCCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGGATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAACGCGATCTCCTGGCTGAAAGAGAACCCGGCTGCAGCGAAAGAGATT
GAGAAGAAGGTACGTGAGCTTCTGCTGAACAACCAGGACTCCAAACCTGATTTCGTGGTGGATGCCGCGGATGCTGAAGA
AACTAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3MZ79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

71.06

99.148

0.705
  recA Acinetobacter baylyi ADP1

74.695

93.182

0.696
  recA Glaesserella parasuis strain SC1401

69.075

98.295

0.679
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56

Multiple sequence alignment