Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BER93_RS11065 Genome accession   NZ_CP016833
Coordinates   2441303..2442334 (-) Length   343 a.a.
NCBI ID   WP_002813818.1    Uniprot ID   A0A1Y6HM04
Organism   Xanthomonas fragariae isolate Fap29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2436303..2447334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BER93_RS11050 (BER93_11050) csrA 2437415..2437627 (-) 213 WP_002813814.1 carbon storage regulator CsrA -
  BER93_RS11055 (BER93_11055) alaS 2437767..2440415 (-) 2649 WP_002813815.1 alanine--tRNA ligase -
  BER93_RS11060 (BER93_11060) recX 2440524..2441012 (-) 489 WP_002813816.1 recombination regulator RecX -
  BER93_RS11065 (BER93_11065) recA 2441303..2442334 (-) 1032 WP_002813818.1 recombinase RecA Machinery gene
  BER93_RS11070 (BER93_11070) lexA 2442507..2443148 (-) 642 WP_002813825.1 transcriptional repressor LexA -
  BER93_RS11075 (BER93_11075) ubiB 2443243..2444919 (-) 1677 WP_002813827.1 2-polyprenylphenol 6-hydroxylase -
  BER93_RS11085 (BER93_11085) - 2445460..2446032 (-) 573 WP_040762998.1 TonB-dependent receptor -
  BER93_RS11090 (BER93_11090) - 2446265..2446636 (-) 372 Protein_2231 DNA gyrase modulator -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37145.78 Da        Isoelectric Point: 5.2088

>NTDB_id=192550 BER93_RS11065 WP_002813818.1 2441303..2442334(-) (recA) [Xanthomonas fragariae isolate Fap29]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGEERIGQGKDNARTYLRDNPQVAVRL
EAELREKFQPAEAPREADDAEKE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=192550 BER93_RS11065 WP_002813818.1 2441303..2442334(-) (recA) [Xanthomonas fragariae isolate Fap29]
ATGGATGAGAACAAGAAGCGCGCCCTTTCTGCTGCACTGAGCCAGATCGAAAAACAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGATCGAGGCGGTCGAAGTTATTCCGACCGGCTCGCTGATGCTGGACATCGCACTGGGGATCGGTG
GTCTGCCGAAGGGCCGCGTGGTTGAAATCTACGGCCCGGAATCCTCGGGCAAAACCACCCTTACCCTGCAGGCGATTGCT
GAGTGCCAGAAAAAGGGCGGCACTGCGGCCTTCATCGACGCCGAGCACGCACTGGACCCGATCTATGCAGCCAAGCTGGG
CGTCAATGTTGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CCAGCTCGGTGGACATTGTGGTGATCGACTCGGTTGCCGCACTGACCCCGAAGGCAGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCAGGTCTGCAGGCTCGTCTGATGAGCCAGGCGCTGCGTAAGCTGACCGGCAACATCAAGCGTTCCAACACCCT
GGTGGTCTTCATCAACCAATTGCGTATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGTCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCGTGACCGAAATCCTATACGGCGA
GGGCATCAGCCGCGAAGGCGAGTTGATCGACATGGGCGTGGAAGCCAAATTGGTCGATAAGGCCGGCGCCTGGTACAGCT
ATGGCGAGGAGCGCATCGGGCAAGGTAAGGACAATGCCCGTACTTACCTGCGCGATAACCCGCAGGTTGCCGTCCGGCTG
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCTGCCGAAGCGCCGCGCGAAGCAGACGATGCCGAGAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6HM04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.565

100

0.7
  recA Ralstonia pseudosolanacearum GMI1000

72.727

96.21

0.7
  recA Pseudomonas stutzeri DSM 10701

70.326

98.251

0.691
  recA Vibrio cholerae strain A1552

67.816

100

0.688
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.816

100

0.688
  recA Acinetobacter baumannii D1279779

71.341

95.627

0.682
  recA Neisseria gonorrhoeae MS11

68.098

95.044

0.647
  recA Neisseria gonorrhoeae MS11

68.098

95.044

0.647
  recA Neisseria gonorrhoeae strain FA1090

68.098

95.044

0.647
  recA Glaesserella parasuis strain SC1401

67.802

94.169

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.376

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

61.677

97.376

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.353

92.42

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

94.752

0.592
  recA Helicobacter pylori strain NCTC11637

60.843

96.793

0.589
  recA Helicobacter pylori 26695

60.542

96.793

0.586
  recA Streptococcus pneumoniae R6

60.366

95.627

0.577
  recA Streptococcus pneumoniae D39

60.366

95.627

0.577
  recA Streptococcus pneumoniae Rx1

60.366

95.627

0.577
  recA Streptococcus mitis SK321

60.366

95.627

0.577
  recA Streptococcus pneumoniae TIGR4

60.366

95.627

0.577
  recA Streptococcus pyogenes NZ131

60

96.21

0.577
  recA Streptococcus mutans UA159

59.697

96.21

0.574
  recA Streptococcus mitis NCTC 12261

60.061

95.627

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.077

94.752

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.576

96.21

0.554

Multiple sequence alignment