Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CfB38_RS04960 Genome accession   NZ_CP016762
Coordinates   1027436..1028500 (+) Length   354 a.a.
NCBI ID   WP_003037330.1    Uniprot ID   -
Organism   Citrobacter freundii strain B38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1022436..1033500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CfB38_RS04930 (CfB38_0962) srlD 1022605..1023384 (-) 780 WP_003037345.1 sorbitol-6-phosphate dehydrogenase -
  CfB38_RS04935 (CfB38_0963) srlB 1023402..1023764 (-) 363 WP_003846051.1 PTS glucitol/sorbitol transporter subunit IIA -
  CfB38_RS04940 (CfB38_0964) - 1023778..1024749 (-) 972 WP_048217212.1 PTS glucitol/sorbitol transporter subunit IIB -
  CfB38_RS04945 (CfB38_0965) srlA 1024746..1025309 (-) 564 WP_003037339.1 PTS glucitol/sorbitol transporter subunit IIC -
  CfB38_RS04950 (CfB38_0966) mltB 1025574..1026653 (+) 1080 WP_003037336.1 lytic murein transglycosylase B -
  CfB38_RS04955 (CfB38_0967) pncC 1026846..1027343 (+) 498 WP_003037333.1 nicotinamide-nucleotide amidase -
  CfB38_RS04960 (CfB38_0968) recA 1027436..1028500 (+) 1065 WP_003037330.1 recombinase RecA Machinery gene
  CfB38_RS04965 (CfB38_0969) recX 1028587..1029087 (+) 501 WP_003037326.1 recombination regulator RecX -
  CfB38_RS04970 (CfB38_0970) alaS 1029216..1031843 (+) 2628 WP_065944611.1 alanine--tRNA ligase -
  CfB38_RS04975 (CfB38_0971) csrA 1032081..1032266 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38175.50 Da        Isoelectric Point: 4.7535

>NTDB_id=191999 CfB38_RS04960 WP_003037330.1 1027436..1028500(+) (recA) [Citrobacter freundii strain B38]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNNQDSTPDFSVDDSGEDVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=191999 CfB38_RS04960 WP_003037330.1 1027436..1028500(+) (recA) [Citrobacter freundii strain B38]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCTGAATCCTCCGGTAAAACAACGCTGACCCTGCAGGTT
ATTGCCGCTGCGCAGCGTGAAGGTAAAACCTGTGCATTTATCGATGCAGAACACGCACTGGACCCGGTCTATGCCCGTAA
GCTTGGCGTTGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCACTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACGCCGAAGGCAGAAATCGAAGGCGAGATT
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTATGCGTCTGTTCGTTTGGATATCCGTCGTATTGGTGCGGTGAAAGAAGGTGACAACGTGGTTGGC
AGCGAAACCCGCGTTAAGGTTGTGAAAAATAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCTGGTGCATGGTACAGCT
ACAACGGTGAGAAAATCGGTCAGGGTAAAGCGAATGCGACCAACTGGCTGAAAGAAAACCCGGCAACTGCGAAAGAAATT
GAGAAGAAATTACGTGAGCTACTGCTCAATAACCAGGATTCAACGCCTGATTTCTCCGTTGATGACAGCGGCGAAGACGT
AAAAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.792

97.74

0.799
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.792

97.74

0.799
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Acinetobacter baylyi ADP1

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

69.231

99.153

0.686
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

57.865

100

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551

Multiple sequence alignment