Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AWQ21_RS02210 Genome accession   NZ_CP016474
Coordinates   466400..467446 (-) Length   348 a.a.
NCBI ID   WP_065715182.1    Uniprot ID   A0A1B1TSZ7
Organism   Picosynechococcus sp. PCC 7003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461400..472446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ21_RS02195 (AWQ21_02195) hetR 462820..463764 (-) 945 WP_232315034.1 heterocyst differentiation master regulator HetR -
  AWQ21_RS02200 (AWQ21_02200) - 464012..465136 (-) 1125 WP_065713127.1 aldo/keto reductase -
  AWQ21_RS02205 (AWQ21_02205) - 465160..466230 (-) 1071 WP_232315035.1 tetratricopeptide repeat protein -
  AWQ21_RS02210 (AWQ21_02210) recA 466400..467446 (-) 1047 WP_065715182.1 recombinase RecA Machinery gene
  AWQ21_RS02215 (AWQ21_02215) ribBA 467615..469279 (-) 1665 WP_065713128.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  AWQ21_RS02220 (AWQ21_02220) - 469368..471029 (-) 1662 WP_065713129.1 ATP-binding protein -
  AWQ21_RS02225 (AWQ21_02225) - 471240..471470 (-) 231 WP_065715183.1 hypothetical protein -
  AWQ21_RS02230 (AWQ21_02230) speD 471842..472225 (-) 384 WP_041443332.1 adenosylmethionine decarboxylase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37232.48 Da        Isoelectric Point: 5.1486

>NTDB_id=188499 AWQ21_RS02210 WP_065715182.1 466400..467446(-) (recA) [Picosynechococcus sp. PCC 7003]
MSAITNNPDKEKALNLVLNQIERNFGKGAIMRLGDAAQMKVETIPSGALTLDQAMGGGFPRGRIVEIYGPESSGKTTVAL
HAIAEVQKAGGVAAFIDAEHALDPTYSAALGVDIENLLVAQPDNGESALEIADQLVRSAAVDLIVIDSVAALVPRAEIEG
EMGDVQVGLQARLMSKALRKIAGNMGRSGCTVIFLNQLRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGGEG
EFGIRSKVKVAKNKVAPPFRIAEFDIIFGKGISSVGCMLDLAEQTGVITRKGAWYSYEGDNIAQGRDNAVKYLEENPDVA
AIVTQKVRENLDMSSMGFGDEHHTTEEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=188499 AWQ21_RS02210 WP_065715182.1 466400..467446(-) (recA) [Picosynechococcus sp. PCC 7003]
ATGTCAGCCATCACCAATAATCCCGACAAAGAAAAGGCCCTAAACCTAGTGCTCAACCAAATCGAGCGCAACTTTGGTAA
AGGGGCGATTATGCGGTTGGGGGATGCCGCCCAGATGAAGGTCGAAACCATCCCCAGTGGAGCATTGACCCTAGATCAGG
CAATGGGGGGTGGCTTCCCACGCGGGAGAATCGTTGAAATCTATGGCCCGGAAAGTTCTGGGAAAACCACGGTCGCTCTC
CATGCGATCGCCGAAGTCCAAAAAGCAGGGGGTGTGGCTGCCTTTATTGATGCAGAACATGCCCTTGATCCCACCTATTC
GGCGGCCCTGGGGGTCGACATCGAAAATTTGCTGGTGGCCCAACCCGATAACGGTGAATCTGCCCTAGAAATTGCCGATC
AATTAGTCCGTTCGGCAGCTGTGGATCTGATTGTGATTGACTCGGTGGCGGCTCTGGTGCCCAGGGCAGAGATTGAAGGG
GAAATGGGCGATGTGCAGGTGGGTCTCCAGGCTCGTCTCATGAGTAAAGCCCTCCGCAAAATTGCTGGGAATATGGGGCG
TTCGGGTTGTACGGTGATTTTTCTCAATCAATTGCGCCAAAAAATTGGTATTAGTTATGGCAATCCAGAGGTGACCACCG
GGGGAACCGCCCTCAAATTCTATGCTTCCGTGCGCCTCGATATCCGACGCATTCAAACCCTCAAGAAAGGAGGAGAAGGG
GAATTTGGGATTCGCTCGAAGGTCAAGGTTGCCAAAAATAAGGTTGCGCCACCGTTCCGTATTGCCGAATTTGACATTAT
CTTTGGCAAAGGGATCTCTAGTGTGGGCTGTATGTTAGACCTCGCAGAACAAACAGGCGTCATTACCCGAAAAGGCGCTT
GGTACAGCTACGAAGGAGATAATATTGCCCAGGGTCGGGACAATGCGGTGAAGTATTTAGAAGAAAATCCCGATGTTGCC
GCCATTGTCACCCAAAAAGTCCGGGAAAATCTCGATATGAGTTCGATGGGTTTTGGGGATGAGCACCACACCACCGAAGA
GGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1TSZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.877

97.989

0.606
  recA Acinetobacter baumannii D1279779

62.27

93.678

0.583
  recA Ralstonia pseudosolanacearum GMI1000

62.264

91.379

0.569
  recA Pseudomonas stutzeri DSM 10701

59.697

94.828

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

57.185

97.989

0.56
  recA Streptococcus mutans UA159

56.105

98.851

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

58.485

94.828

0.555
  recA Glaesserella parasuis strain SC1401

59.752

92.816

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.658

95.69

0.552
  recA Streptococcus pneumoniae TIGR4

55.814

98.851

0.552
  recA Streptococcus pneumoniae Rx1

55.814

98.851

0.552
  recA Streptococcus pneumoniae D39

55.814

98.851

0.552
  recA Streptococcus pneumoniae R6

55.814

98.851

0.552
  recA Helicobacter pylori 26695

58.41

93.966

0.549
  recA Helicobacter pylori strain NCTC11637

58.41

93.966

0.549
  recA Vibrio cholerae strain A1552

58.589

93.678

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.589

93.678

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.102

98.563

0.543
  recA Streptococcus mitis SK321

58.333

93.103

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.025

93.103

0.54
  recA Neisseria gonorrhoeae MS11

58.385

92.529

0.54
  recA Neisseria gonorrhoeae MS11

58.385

92.529

0.54
  recA Neisseria gonorrhoeae strain FA1090

58.385

92.529

0.54
  recA Streptococcus mitis NCTC 12261

57.716

93.103

0.537
  recA Streptococcus pyogenes NZ131

57.099

93.103

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.41

95.402

0.5

Multiple sequence alignment