Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BSY15_RS06325 Genome accession   NZ_CP016447
Coordinates   1399181..1400251 (+) Length   356 a.a.
NCBI ID   WP_069106430.1    Uniprot ID   A0A1B3PME5
Organism   Acidovorax sp. RAC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394181..1405251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY15_RS06300 (BSY15_1274) - 1394616..1395290 (-) 675 WP_069104086.1 response regulator transcription factor -
  BSY15_RS06305 (BSY15_1275) - 1395410..1396330 (-) 921 WP_069104087.1 N-formylglutamate amidohydrolase -
  BSY15_RS06310 (BSY15_1276) - 1396466..1397431 (-) 966 WP_069104088.1 tripartite tricarboxylate transporter substrate binding protein BugE -
  BSY15_RS06315 (BSY15_1277) - 1397541..1398491 (+) 951 WP_069104089.1 LysR substrate-binding domain-containing protein -
  BSY15_RS06320 (BSY15_1278) - 1398529..1399038 (-) 510 WP_069104090.1 MarR family winged helix-turn-helix transcriptional regulator -
  BSY15_RS06325 (BSY15_1279) recA 1399181..1400251 (+) 1071 WP_069106430.1 recombinase RecA Machinery gene
  BSY15_RS06330 (BSY15_1280) recX 1400566..1401033 (+) 468 WP_069104091.1 recombination regulator RecX -
  BSY15_RS06335 (BSY15_1281) argC 1401233..1402165 (-) 933 WP_069104092.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  BSY15_RS06340 (BSY15_1282) sucC 1402392..1403552 (+) 1161 WP_069104093.1 ADP-forming succinate--CoA ligase subunit beta -
  BSY15_RS06345 (BSY15_1283) sucD 1403568..1404464 (+) 897 WP_056643983.1 succinate--CoA ligase subunit alpha -
  BSY15_RS21605 - 1404593..1404796 (+) 204 WP_231940716.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37852.55 Da        Isoelectric Point: 4.9530

>NTDB_id=188316 BSY15_RS06325 WP_069106430.1 1399181..1400251(+) (recA) [Acidovorax sp. RAC01]
MDVKGTNPALPVNTEKAKALAAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES
SGKTTLTLQVIAEMQKLGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAAL
TPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTG
TIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVEKSGAWYAYNGEKIGQGRDNAREFL
RENSDLAREIENKVRDSLGIALLPPALAPASAGDEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=188316 BSY15_RS06325 WP_069106430.1 1399181..1400251(+) (recA) [Acidovorax sp. RAC01]
ATGGACGTCAAAGGCACCAACCCCGCTCTGCCGGTCAACACCGAAAAGGCCAAGGCCCTGGCGGCCGCGCTGGCCCAGAT
CGAAAAGCAGTTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAAGTGATCGAGGACATCCAGGTGGTGTCCACCG
GCTCGCTGGGCCTCGATATCGCCCTGGGCGTGGGCGGCCTACCGCGCGGCCGGGTGGTTGAAATCTACGGCCCGGAATCG
TCGGGCAAGACCACGCTGACCCTGCAGGTCATTGCCGAGATGCAAAAGCTGGGCGGCACCTGCGCCTTTGTGGACGCCGA
GCACGCGCTGGATGTGCAGTACGCCCAGAAGCTGGGTGTGCAGCTGTCCGACCTGCTGATCAGCCAGCCCGACACCGGCG
AACAGGCCCTTGAAATCGTGGACAGCCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTGGTCGACTCGGTGGCCGCGCTC
ACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACGCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCG
TAAGCTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCAGCCCTGAAACCACCACTGGTGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCACCGGC
ACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAAACCAAGGTCAAGGTGGTCAAGAACAAGGTTTCGCCTCCGTTCAA
GACGGCCGAGTTCGACATCCTCTTTGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGACCGCCAAGA
TCGTGGAAAAGAGCGGTGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAATTCCTG
CGCGAGAACTCAGACCTTGCGCGGGAAATCGAAAACAAGGTGCGGGACAGCTTGGGCATCGCCCTGCTGCCACCGGCGCT
GGCGCCAGCCAGTGCCGGCGACGAGGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3PME5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.35

88.202

0.753
  recA Pseudomonas stutzeri DSM 10701

73.089

91.854

0.671
  recA Acinetobacter baylyi ADP1

68.895

96.629

0.666
  recA Neisseria gonorrhoeae MS11

70.997

92.978

0.66
  recA Neisseria gonorrhoeae strain FA1090

70.997

92.978

0.66
  recA Neisseria gonorrhoeae MS11

70.997

92.978

0.66
  recA Glaesserella parasuis strain SC1401

68.824

95.506

0.657
  recA Acinetobacter baumannii D1279779

70.642

91.854

0.649
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.031

91.854

0.643
  recA Vibrio cholerae strain A1552

70.031

91.854

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.576

92.697

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

92.978

0.624
  recA Helicobacter pylori strain NCTC11637

64.955

92.978

0.604
  recA Helicobacter pylori 26695

64.955

92.978

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

62.611

94.663

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

91.854

0.59
  recA Lactococcus lactis subsp. cremoris KW2

61.515

92.697

0.57
  recA Streptococcus pyogenes NZ131

61.094

92.416

0.565
  recA Streptococcus mutans UA159

60.606

92.697

0.562
  recA Streptococcus pneumoniae Rx1

60

92.697

0.556
  recA Streptococcus pneumoniae D39

60

92.697

0.556
  recA Streptococcus pneumoniae R6

60

92.697

0.556
  recA Streptococcus pneumoniae TIGR4

60

92.697

0.556
  recA Streptococcus mitis NCTC 12261

59.697

92.697

0.553
  recA Streptococcus mitis SK321

59.697

92.697

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.169

0.542

Multiple sequence alignment