Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BBF96_RS03770 Genome accession   NZ_CP016379
Coordinates   830246..831292 (+) Length   348 a.a.
NCBI ID   WP_127015905.1    Uniprot ID   A0A3Q9HP84
Organism   Anoxybacter fermentans strain DY22613     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 825246..836292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBF96_RS03750 (BBF96_03730) - 825734..826261 (+) 528 WP_164730887.1 hypothetical protein -
  BBF96_RS03755 (BBF96_03735) - 826263..828050 (+) 1788 WP_127015902.1 secretin and TonB N-terminal domain-containing protein -
  BBF96_RS03760 (BBF96_03740) - 828241..829164 (+) 924 WP_127015903.1 DMT family transporter -
  BBF96_RS03765 (BBF96_03745) thpR 829543..830112 (+) 570 WP_127015904.1 RNA 2',3'-cyclic phosphodiesterase -
  BBF96_RS03770 (BBF96_03750) recA 830246..831292 (+) 1047 WP_127015905.1 recombinase RecA Machinery gene
  BBF96_RS03775 (BBF96_03755) - 831363..831851 (+) 489 WP_127015906.1 regulatory protein RecX -
  BBF96_RS03780 (BBF96_03760) rny 831973..833511 (+) 1539 WP_205665705.1 ribonuclease Y -
  BBF96_RS03785 (BBF96_03765) - 833683..834207 (+) 525 WP_127015907.1 hypothetical protein -
  BBF96_RS03790 (BBF96_03770) - 834348..835136 (+) 789 WP_127015908.1 TIGR00282 family metallophosphoesterase -
  BBF96_RS03795 (BBF96_03775) - 835300..835560 (+) 261 WP_127015909.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37391.97 Da        Isoelectric Point: 5.5892

>NTDB_id=187604 BBF96_RS03770 WP_127015905.1 830246..831292(+) (recA) [Anoxybacter fermentans strain DY22613]
MTKDKEKALEIAVKQIERQFGQGSIMRLGEAASMKVEVIPTGAITLDLALGVGGVPRGRIIEIFGPESSGKTTVALHIIA
EAQKRGGIAAFIDAEHALDPKYAKAIGVNIDNLLISQPDTGEQALEICEALVRSGAIDVIVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQAMRKLSGSVSKSKTVCIFINQLREKVGVMFGNPEVTPGGRALKFYASVRMDVRKIQSIKASSSSDDYI
GNRVKVKVVKNKVAPPFKTAEFDIIYGEGISSIGCILDEAVNAEIISKAGSWYSYGDERLGQGRENVKEFLKKNPDILQA
IEKELKTKLGLIEATSDEEKSSSDEESA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=187604 BBF96_RS03770 WP_127015905.1 830246..831292(+) (recA) [Anoxybacter fermentans strain DY22613]
ATGACCAAAGATAAAGAAAAAGCCCTTGAGATTGCGGTCAAACAGATTGAACGACAATTTGGACAGGGTTCTATTATGCG
CTTAGGGGAAGCTGCATCTATGAAAGTAGAAGTGATTCCGACTGGGGCTATTACTCTGGATTTGGCTTTAGGAGTAGGAG
GTGTACCCAGAGGTAGAATTATTGAGATTTTTGGCCCTGAATCTTCCGGTAAGACTACAGTAGCTCTGCACATAATTGCT
GAAGCGCAAAAACGGGGCGGAATAGCGGCTTTTATTGATGCTGAACATGCCCTTGATCCCAAATATGCGAAAGCAATTGG
TGTAAATATTGACAATCTTTTAATTTCTCAGCCTGATACTGGTGAACAGGCTTTAGAGATTTGTGAAGCTTTAGTCCGTA
GTGGTGCAATTGATGTCATTGTAGTTGACTCTGTAGCAGCATTGGTACCTAAAGCTGAGATTGAAGGAGAAATGGGAGAT
AGTCATGTTGGTTTGCAGGCCAGATTGATGTCGCAGGCGATGAGAAAACTTTCGGGTTCTGTATCCAAATCTAAAACTGT
CTGCATTTTTATTAACCAGCTTCGTGAAAAGGTTGGTGTCATGTTCGGTAATCCGGAAGTTACTCCAGGTGGACGGGCTT
TGAAGTTCTATGCTTCAGTCCGGATGGATGTAAGGAAGATCCAGTCTATTAAAGCCAGCTCCAGTAGTGATGATTATATT
GGTAACAGAGTCAAGGTTAAGGTAGTTAAGAACAAAGTTGCGCCACCTTTTAAAACTGCAGAGTTTGATATCATTTATGG
TGAGGGAATTTCCTCTATTGGGTGTATTTTAGATGAAGCTGTAAATGCTGAGATCATTAGCAAAGCTGGCTCCTGGTATT
CTTACGGAGATGAACGTTTAGGTCAAGGCCGGGAGAATGTAAAAGAATTTTTGAAAAAGAATCCGGATATTTTACAGGCG
ATTGAGAAAGAGCTGAAAACAAAGTTGGGATTGATAGAAGCTACTTCAGATGAAGAAAAATCTTCTTCAGATGAAGAATC
TGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9HP84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.293

94.253

0.644
  recA Streptococcus pneumoniae TIGR4

64.638

99.138

0.641
  recA Streptococcus pneumoniae Rx1

64.638

99.138

0.641
  recA Streptococcus pneumoniae D39

64.638

99.138

0.641
  recA Streptococcus pneumoniae R6

64.638

99.138

0.641
  recA Streptococcus mutans UA159

64.244

98.851

0.635
  recA Streptococcus mitis SK321

64.431

98.563

0.635
  recA Streptococcus mitis NCTC 12261

65.861

95.115

0.626
  recA Latilactobacillus sakei subsp. sakei 23K

62.824

99.713

0.626
  recA Streptococcus pyogenes NZ131

64.329

94.253

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.224

98.563

0.603
  recA Lactococcus lactis subsp. cremoris KW2

63.142

95.115

0.601
  recA Acinetobacter baylyi ADP1

59.195

100

0.592
  recA Neisseria gonorrhoeae MS11

58.689

100

0.592
  recA Neisseria gonorrhoeae strain FA1090

58.689

100

0.592
  recA Neisseria gonorrhoeae MS11

58.689

100

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

94.54

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.398

94.54

0.58
  recA Vibrio cholerae strain A1552

61.398

94.54

0.58
  recA Glaesserella parasuis strain SC1401

58.213

99.713

0.58
  recA Helicobacter pylori 26695

61.094

94.54

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.696

91.667

0.575
  recA Helicobacter pylori strain NCTC11637

60.423

95.115

0.575
  recA Acinetobacter baumannii D1279779

60.486

94.54

0.572
  recA Ralstonia pseudosolanacearum GMI1000

62.342

90.805

0.566
  recA Pseudomonas stutzeri DSM 10701

56.105

98.851

0.555

Multiple sequence alignment