Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF630erm_RS07630 | Genome accession | NZ_CP016318 |
| Coordinates | 1545207..1546253 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain 630 delta erm | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1519148..1584028 | 1545207..1546253 | within | 0 |
Gene organization within MGE regions
Location: 1519148..1584028
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF630erm_RS07510 (CDIF630erm_01461) | rimP | 1521564..1522025 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF630erm_RS07515 (CDIF630erm_01462) | nusA | 1522055..1523209 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF630erm_RS07520 (CDIF630erm_01463) | rnpM | 1523216..1523497 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF630erm_RS07525 (CDIF630erm_01464) | - | 1523487..1523798 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF630erm_RS07530 (CDIF630erm_01465) | infB | 1523820..1525760 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF630erm_RS07535 (CDIF630erm_01466) | rbfA | 1525803..1526183 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF630erm_RS07540 (CDIF630erm_01467) | - | 1526164..1526841 (+) | 678 | Protein_1361 | DHH family phosphoesterase | - |
| CDIF630erm_RS07545 (CDIF630erm_01468) | tnpB | 1527490..1528608 (+) | 1119 | WP_011861173.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF630erm_RS07550 (CDIF630erm_01469) | - | 1528726..1529031 (+) | 306 | Protein_1363 | DHH family phosphoesterase | - |
| CDIF630erm_RS07555 (CDIF630erm_01470) | truB | 1529044..1529949 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF630erm_RS07560 (CDIF630erm_01471) | - | 1530080..1531009 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF630erm_RS07570 (CDIF630erm_01472) | rpsO | 1531113..1531370 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF630erm_RS07575 (CDIF630erm_01473) | - | 1531610..1532455 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF630erm_RS07580 (CDIF630erm_01474) | pnp | 1532580..1534691 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF630erm_RS07585 (CDIF630erm_01475) | - | 1534959..1535702 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF630erm_RS07590 (CDIF630erm_01476) | - | 1535860..1537107 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| CDIF630erm_RS07595 (CDIF630erm_01477) | - | 1537142..1537387 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF630erm_RS07600 (CDIF630erm_01478) | dapG | 1537397..1538620 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF630erm_RS07605 (CDIF630erm_01479) | - | 1538733..1539467 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF630erm_RS07610 (CDIF630erm_01480) | - | 1539590..1542001 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF630erm_RS07615 (CDIF630erm_01481) | mnmH | 1542004..1543062 (+) | 1059 | WP_011861175.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF630erm_RS07620 (CDIF630erm_01482) | rimO | 1543056..1544390 (+) | 1335 | WP_011861176.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF630erm_RS07625 (CDIF630erm_01483) | pgsA | 1544377..1544919 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF630erm_RS07630 (CDIF630erm_01484) | recA | 1545207..1546253 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF630erm_RS07635 (CDIF630erm_01485) | rny | 1546429..1547970 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF630erm_RS07640 (CDIF630erm_01486) | - | 1548605..1550386 (+) | 1782 | WP_011861177.1 | UvrD-helicase domain-containing protein | - |
| CDIF630erm_RS07645 (CDIF630erm_01487) | lepB | 1550468..1550998 (-) | 531 | WP_011861178.1 | signal peptidase I | - |
| CDIF630erm_RS07650 (CDIF630erm_01488) | - | 1551038..1551862 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF630erm_RS07655 (CDIF630erm_01489) | - | 1552119..1553027 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF630erm_RS07660 (CDIF630erm_01490) | purB | 1553171..1554616 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| CDIF630erm_RS07665 (CDIF630erm_01491) | - | 1554927..1555379 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF630erm_RS07670 (CDIF630erm_01492) | - | 1555791..1557368 (+) | 1578 | WP_011861179.1 | PTS transporter subunit EIIC | - |
| CDIF630erm_RS07675 (CDIF630erm_01493) | - | 1557516..1558268 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF630erm_RS07680 (CDIF630erm_01494) | - | 1558401..1559747 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| CDIF630erm_RS07685 (CDIF630erm_01495) | - | 1559859..1561055 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF630erm_RS07690 (CDIF630erm_01496) | galT | 1561440..1562390 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF630erm_RS07695 (CDIF630erm_01497) | - | 1562550..1563302 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF630erm_RS07700 (CDIF630erm_01498) | - | 1563394..1564170 (-) | 777 | WP_016729594.1 | 3'-5' exonuclease | - |
| CDIF630erm_RS07705 (CDIF630erm_01499) | - | 1564485..1566383 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF630erm_RS07710 (CDIF630erm_01500) | - | 1566511..1567632 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIF630erm_RS07715 (CDIF630erm_01501) | - | 1567831..1568163 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF630erm_RS07720 (CDIF630erm_01502) | - | 1568150..1569232 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| CDIF630erm_RS07725 (CDIF630erm_01503) | - | 1569225..1570295 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF630erm_RS07730 (CDIF630erm_01504) | - | 1570397..1570933 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF630erm_RS07735 (CDIF630erm_01505) | - | 1571049..1571756 (+) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF630erm_RS07740 (CDIF630erm_01506) | - | 1571758..1572474 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF630erm_RS07745 (CDIF630erm_01507) | - | 1572476..1573234 (+) | 759 | WP_011861184.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF630erm_RS07750 (CDIF630erm_01508) | - | 1573369..1574757 (+) | 1389 | WP_011861185.1 | two-component system sensor histidine kinase | - |
| CDIF630erm_RS07755 (CDIF630erm_01509) | - | 1574833..1575654 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF630erm_RS07760 (CDIF630erm_01510) | - | 1575905..1577059 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF630erm_RS07765 (CDIF630erm_01511) | - | 1577242..1577442 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF630erm_RS07770 (CDIF630erm_01512) | - | 1577863..1578291 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF630erm_RS07775 (CDIF630erm_01513) | - | 1578434..1579189 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF630erm_RS07785 (CDIF630erm_01515) | - | 1579890..1580396 (-) | 507 | WP_011861186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF630erm_RS07790 (CDIF630erm_01516) | - | 1580478..1580798 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF630erm_RS07795 (CDIF630erm_01517) | - | 1580967..1581164 (+) | 198 | WP_011861187.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630erm_RS07800 (CDIF630erm_01518) | - | 1581269..1581709 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF630erm_RS07805 (CDIF630erm_01519) | - | 1581958..1582401 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| CDIF630erm_RS07810 (CDIF630erm_01520) | - | 1582406..1583470 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF630erm_RS07815 (CDIF630erm_01521) | - | 1583484..1583912 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=186854 CDIF630erm_RS07630 WP_003428218.1 1545207..1546253(+) (recA) [Clostridioides difficile strain 630 delta erm]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=186854 CDIF630erm_RS07630 WP_003428218.1 1545207..1546253(+) (recA) [Clostridioides difficile strain 630 delta erm]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.