Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | Q5O_RS20480 | Genome accession | NZ_CP016212 |
| Coordinates | 4498870..4499937 (-) | Length | 355 a.a. |
| NCBI ID | WP_003252365.1 | Uniprot ID | I7B6K4 |
| Organism | Pseudomonas putida JB | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4497291..4544488 | 4498870..4499937 | within | 0 |
Gene organization within MGE regions
Location: 4497291..4544488
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q5O_RS20475 (Q5O_20475) | recX | 4498378..4498848 (-) | 471 | WP_019436651.1 | recombination regulator RecX | - |
| Q5O_RS20480 (Q5O_20480) | recA | 4498870..4499937 (-) | 1068 | WP_003252365.1 | recombinase RecA | Machinery gene |
| Q5O_RS20485 (Q5O_20485) | - | 4500041..4500523 (-) | 483 | WP_010952695.1 | CinA family protein | - |
| Q5O_RS20490 (Q5O_20490) | - | 4500579..4501646 (-) | 1068 | WP_014592125.1 | hypothetical protein | - |
| Q5O_RS20495 (Q5O_20495) | - | 4502422..4503417 (+) | 996 | WP_070384245.1 | DUF4238 domain-containing protein | - |
| Q5O_RS20500 (Q5O_20500) | - | 4503419..4504609 (+) | 1191 | WP_070384246.1 | hypothetical protein | - |
| Q5O_RS20505 (Q5O_20505) | - | 4504941..4505735 (-) | 795 | WP_070384247.1 | DNA adenine methylase | - |
| Q5O_RS20510 (Q5O_20510) | - | 4505889..4506443 (-) | 555 | WP_070384248.1 | lysis system i-spanin subunit Rz | - |
| Q5O_RS20515 (Q5O_20515) | - | 4506443..4507012 (-) | 570 | WP_070384249.1 | glycoside hydrolase family 19 protein | - |
| Q5O_RS20520 (Q5O_20520) | - | 4507051..4508094 (-) | 1044 | WP_070384250.1 | phage late control D family protein | - |
| Q5O_RS20525 (Q5O_20525) | - | 4508154..4508360 (-) | 207 | WP_070384251.1 | tail protein X | - |
| Q5O_RS20530 (Q5O_20530) | - | 4508335..4509180 (-) | 846 | WP_070384252.1 | phage tail protein | - |
| Q5O_RS20535 (Q5O_20535) | - | 4509190..4513089 (-) | 3900 | WP_070384253.1 | phage tail tape measure protein | - |
| Q5O_RS20540 (Q5O_20540) | - | 4513221..4513517 (-) | 297 | WP_070384254.1 | phage tail assembly protein | - |
| Q5O_RS20545 (Q5O_20545) | - | 4513566..4514075 (-) | 510 | WP_070384255.1 | phage major tail tube protein | - |
| Q5O_RS20550 (Q5O_20550) | - | 4514088..4515263 (-) | 1176 | WP_070384256.1 | phage tail sheath family protein | - |
| Q5O_RS20555 (Q5O_20555) | - | 4515328..4515651 (-) | 324 | WP_081343634.1 | hypothetical protein | - |
| Q5O_RS20560 (Q5O_20560) | - | 4515716..4516180 (-) | 465 | WP_070384257.1 | hypothetical protein | - |
| Q5O_RS20565 (Q5O_20565) | - | 4516188..4516928 (-) | 741 | WP_070384258.1 | hypothetical protein | - |
| Q5O_RS20570 (Q5O_20570) | - | 4516932..4517798 (-) | 867 | WP_081343635.1 | phage tail protein | - |
| Q5O_RS20575 (Q5O_20575) | - | 4517795..4518517 (-) | 723 | WP_070384259.1 | phage tail protein I | - |
| Q5O_RS20580 (Q5O_20580) | - | 4518514..4519494 (-) | 981 | WP_070384260.1 | baseplate assembly protein | - |
| Q5O_RS20585 (Q5O_20585) | - | 4519491..4519817 (-) | 327 | WP_070384261.1 | GPW/gp25 family protein | - |
| Q5O_RS20590 (Q5O_20590) | - | 4519820..4520098 (-) | 279 | WP_070384262.1 | hypothetical protein | - |
| Q5O_RS20595 (Q5O_20595) | - | 4520142..4520744 (-) | 603 | WP_070384263.1 | phage baseplate assembly protein V | - |
| Q5O_RS20600 (Q5O_20600) | - | 4520741..4521271 (-) | 531 | WP_070384264.1 | hypothetical protein | - |
| Q5O_RS20605 (Q5O_20605) | - | 4521264..4521932 (-) | 669 | WP_070384265.1 | hypothetical protein | - |
| Q5O_RS20610 (Q5O_20610) | - | 4521929..4522252 (-) | 324 | WP_070384266.1 | head-tail joining protein | - |
| Q5O_RS20615 (Q5O_20615) | - | 4522255..4522437 (-) | 183 | WP_070384267.1 | hypothetical protein | - |
| Q5O_RS20620 (Q5O_20620) | - | 4522439..4523467 (-) | 1029 | WP_070384268.1 | major capsid protein | - |
| Q5O_RS20625 (Q5O_20625) | - | 4523479..4523829 (-) | 351 | WP_070384269.1 | head decoration protein | - |
| Q5O_RS20630 (Q5O_20630) | - | 4523843..4525063 (-) | 1221 | WP_070384270.1 | S49 family peptidase | - |
| Q5O_RS20635 (Q5O_20635) | - | 4525066..4526673 (-) | 1608 | WP_070384271.1 | phage portal protein | - |
| Q5O_RS20640 (Q5O_20640) | - | 4526676..4526891 (-) | 216 | WP_070384272.1 | hypothetical protein | - |
| Q5O_RS20645 (Q5O_20645) | - | 4526904..4528790 (-) | 1887 | WP_172830939.1 | phage terminase large subunit family protein | - |
| Q5O_RS20650 (Q5O_20650) | - | 4528834..4529355 (-) | 522 | WP_070384274.1 | terminase small subunit | - |
| Q5O_RS20655 (Q5O_20655) | - | 4529498..4529845 (-) | 348 | WP_070384275.1 | phage holin family protein | - |
| Q5O_RS20660 (Q5O_20660) | - | 4530050..4530601 (-) | 552 | WP_081343636.1 | hypothetical protein | - |
| Q5O_RS27780 | - | 4530591..4530929 (-) | 339 | WP_155766717.1 | hypothetical protein | - |
| Q5O_RS20665 (Q5O_20665) | - | 4530926..4533691 (-) | 2766 | WP_070384276.1 | bifunctional DNA primase/polymerase | - |
| Q5O_RS20670 (Q5O_20670) | - | 4533688..4533954 (-) | 267 | WP_420492588.1 | TraR/DksA C4-type zinc finger protein | - |
| Q5O_RS20675 (Q5O_20675) | - | 4533884..4534372 (-) | 489 | WP_070384278.1 | phage regulatory CII family protein | - |
| Q5O_RS20680 (Q5O_20680) | - | 4534601..4534795 (-) | 195 | WP_070384279.1 | helix-turn-helix domain-containing protein | - |
| Q5O_RS20685 (Q5O_20685) | - | 4534846..4535553 (+) | 708 | WP_257785624.1 | LexA family protein | - |
| Q5O_RS20690 (Q5O_20690) | - | 4535808..4536317 (+) | 510 | WP_070384280.1 | hypothetical protein | - |
| Q5O_RS20695 (Q5O_20695) | - | 4536314..4536553 (+) | 240 | WP_060494954.1 | pyocin activator PrtN family protein | - |
| Q5O_RS20700 (Q5O_20700) | - | 4536644..4537162 (+) | 519 | WP_070384281.1 | hypothetical protein | - |
| Q5O_RS27375 | - | 4537159..4537413 (+) | 255 | WP_081343637.1 | AAA family ATPase | - |
| Q5O_RS28290 | - | 4537410..4537538 (+) | 129 | WP_257785614.1 | hypothetical protein | - |
| Q5O_RS20705 (Q5O_20705) | - | 4537535..4537819 (+) | 285 | WP_155766718.1 | hypothetical protein | - |
| Q5O_RS20710 (Q5O_20710) | - | 4538009..4538194 (+) | 186 | WP_070384283.1 | hypothetical protein | - |
| Q5O_RS20715 (Q5O_20715) | - | 4538191..4538913 (+) | 723 | WP_070384284.1 | hypothetical protein | - |
| Q5O_RS20720 (Q5O_20720) | - | 4538910..4539104 (+) | 195 | WP_060495023.1 | hypothetical protein | - |
| Q5O_RS20725 (Q5O_20725) | - | 4539074..4540321 (+) | 1248 | WP_070384285.1 | site-specific integrase | - |
| Q5O_RS20730 (Q5O_20730) | - | 4540566..4541237 (-) | 672 | WP_070384286.1 | hypothetical protein | - |
| Q5O_RS27785 | - | 4541258..4541938 (-) | 681 | WP_155766719.1 | hypothetical protein | - |
| Q5O_RS20740 (Q5O_20740) | - | 4541935..4542468 (-) | 534 | WP_070384288.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37544.89 Da Isoelectric Point: 5.3228
>NTDB_id=186217 Q5O_RS20480 WP_003252365.1 4498870..4499937(-) (recA) [Pseudomonas putida JB]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAAEADADDMADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAAEADADDMADADAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=186217 Q5O_RS20480 WP_003252365.1 4498870..4499937(-) (recA) [Pseudomonas putida JB]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGTCAAGGCATTCCGGCCATCTCCACCGGCTCGCTGGGCTTGGATATCGCACTGGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGTAAGACCACGCTCACCCTGTCTGTCATCGCT
GAAGCGCAGAAGAACGGTGCTACCTGCGCCTTCGTCGACGCCGAACATGCCCTTGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAGGCCCTTGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATTGTCGACTCCGTTGCCGCGCTGGTACCGAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCATGTGGGTCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCGAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCCC
TGAAGTTCTATGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCTCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGGAAAGGTAT
CTACCGTAACGGCGAGATCATTGATCTGGGGGTATCTCAGGGCTTGGTCGAGAAGTCCGGCGCCTGGTACGCCTACCAAG
GCAACAAGATCGGTCAAGGCAAAGCCAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGTGAAAAGTTGCTGAAAGCGGGTGCTGCTGCTGAAGCCGGCAAAGCTGCTGCTGCCGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGTCAAGGCATTCCGGCCATCTCCACCGGCTCGCTGGGCTTGGATATCGCACTGGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGTAAGACCACGCTCACCCTGTCTGTCATCGCT
GAAGCGCAGAAGAACGGTGCTACCTGCGCCTTCGTCGACGCCGAACATGCCCTTGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAGGCCCTTGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATTGTCGACTCCGTTGCCGCGCTGGTACCGAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCATGTGGGTCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCGAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCCC
TGAAGTTCTATGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCTCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGGAAAGGTAT
CTACCGTAACGGCGAGATCATTGATCTGGGGGTATCTCAGGGCTTGGTCGAGAAGTCCGGCGCCTGGTACGCCTACCAAG
GCAACAAGATCGGTCAAGGCAAAGCCAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGTGAAAAGTTGCTGAAAGCGGGTGCTGCTGCTGAAGCCGGCAAAGCTGCTGCTGCCGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA
Similar proteins
Only experimentally validated proteins are listed.