Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF29637_RS06625 | Genome accession | NZ_CP016106 |
| Coordinates | 1373755..1374801 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 29637 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1341823..1419396 | 1373755..1374801 | within | 0 |
Gene organization within MGE regions
Location: 1341823..1419396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29637_RS06485 (CDIF29637_01276) | - | 1342814..1343482 (-) | 669 | WP_003438292.1 | YwaF family protein | - |
| CDIF29637_RS06490 (CDIF29637_01277) | - | 1343751..1343891 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| CDIF29637_RS06495 (CDIF29637_01278) | - | 1344066..1344386 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| CDIF29637_RS06500 (CDIF29637_01279) | - | 1344506..1345243 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| CDIF29637_RS06505 (CDIF29637_01280) | acd | 1345458..1347281 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| CDIF29637_RS06510 (CDIF29637_01281) | - | 1347496..1351794 (+) | 4299 | WP_021401195.1 | PolC-type DNA polymerase III | - |
| CDIF29637_RS06515 (CDIF29637_01282) | rimP | 1351998..1352459 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF29637_RS06520 (CDIF29637_01283) | nusA | 1352489..1353643 (+) | 1155 | WP_021401170.1 | transcription termination factor NusA | - |
| CDIF29637_RS06525 (CDIF29637_01284) | rnpM | 1353650..1353931 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF29637_RS06530 (CDIF29637_01285) | - | 1353921..1354232 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF29637_RS06535 (CDIF29637_01286) | infB | 1354254..1356194 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF29637_RS06540 (CDIF29637_01287) | rbfA | 1356237..1356617 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF29637_RS06545 (CDIF29637_01288) | - | 1356598..1357581 (+) | 984 | WP_095890975.1 | DHH family phosphoesterase | - |
| CDIF29637_RS06550 (CDIF29637_01289) | truB | 1357594..1358499 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF29637_RS06555 (CDIF29637_01290) | - | 1358630..1359559 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF29637_RS06565 (CDIF29637_01291) | rpsO | 1359663..1359920 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF29637_RS06570 (CDIF29637_01292) | - | 1360160..1361005 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF29637_RS06575 (CDIF29637_01293) | pnp | 1361130..1363241 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF29637_RS06580 (CDIF29637_01294) | - | 1363507..1364250 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF29637_RS06585 (CDIF29637_01295) | - | 1364408..1365655 (+) | 1248 | WP_021401196.1 | M16 family metallopeptidase | - |
| CDIF29637_RS06590 (CDIF29637_01296) | - | 1365690..1365935 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF29637_RS06595 (CDIF29637_01297) | dapG | 1365945..1367168 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF29637_RS06600 (CDIF29637_01298) | - | 1367281..1368015 (+) | 735 | WP_021401177.1 | ClpP family protease | - |
| CDIF29637_RS06605 (CDIF29637_01299) | - | 1368138..1370549 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF29637_RS06610 (CDIF29637_01300) | mnmH | 1370552..1371610 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF29637_RS06615 (CDIF29637_01301) | rimO | 1371604..1372938 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF29637_RS06620 (CDIF29637_01302) | pgsA | 1372925..1373467 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF29637_RS06625 (CDIF29637_01303) | recA | 1373755..1374801 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF29637_RS06630 (CDIF29637_01304) | rny | 1374977..1376518 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF29637_RS06635 (CDIF29637_01305) | - | 1377152..1378933 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF29637_RS06640 (CDIF29637_01306) | lepB | 1379015..1379545 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CDIF29637_RS06645 (CDIF29637_01307) | - | 1379585..1380409 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF29637_RS06650 (CDIF29637_01308) | - | 1380666..1381574 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF29637_RS06655 (CDIF29637_01309) | purB | 1381718..1383163 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| CDIF29637_RS06660 (CDIF29637_01310) | - | 1383474..1383926 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29637_RS06665 (CDIF29637_01311) | - | 1384261..1385457 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF29637_RS06670 (CDIF29637_01312) | galT | 1385842..1386792 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF29637_RS06675 (CDIF29637_01313) | - | 1386953..1387705 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF29637_RS06680 (CDIF29637_01314) | - | 1387797..1388573 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF29637_RS06685 (CDIF29637_01315) | - | 1388888..1390786 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF29637_RS06690 (CDIF29637_01316) | - | 1390914..1392035 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF29637_RS06695 (CDIF29637_01317) | - | 1392234..1392566 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF29637_RS06700 (CDIF29637_01318) | - | 1392553..1393611 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| CDIF29637_RS06705 (CDIF29637_01319) | - | 1393604..1394674 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF29637_RS06710 (CDIF29637_01320) | - | 1394776..1395312 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF29637_RS06715 (CDIF29637_01321) | - | 1395428..1396135 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF29637_RS06720 (CDIF29637_01322) | - | 1396137..1396853 (+) | 717 | WP_021401200.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF29637_RS06725 (CDIF29637_01323) | - | 1396855..1397613 (+) | 759 | WP_021401186.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF29637_RS06730 (CDIF29637_01324) | - | 1397748..1399136 (+) | 1389 | WP_118701617.1 | two-component system sensor histidine kinase | - |
| CDIF29637_RS06735 (CDIF29637_01325) | - | 1399212..1400033 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF29637_RS06740 (CDIF29637_01326) | - | 1400284..1401438 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| CDIF29637_RS06745 (CDIF29637_01327) | - | 1401621..1401821 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF29637_RS06750 (CDIF29637_01328) | - | 1402242..1402670 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF29637_RS06755 (CDIF29637_01329) | - | 1402813..1403568 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF29637_RS06765 (CDIF29637_01331) | - | 1404269..1404775 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29637_RS06770 (CDIF29637_01332) | - | 1404857..1405177 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF29637_RS06775 (CDIF29637_01333) | - | 1405346..1405543 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29637_RS06780 (CDIF29637_01334) | - | 1405648..1406088 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF29637_RS06785 (CDIF29637_01335) | - | 1406337..1406780 (+) | 444 | WP_021414348.1 | phage tail terminator family protein | - |
| CDIF29637_RS06790 (CDIF29637_01336) | - | 1406785..1407849 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF29637_RS06795 (CDIF29637_01337) | - | 1407863..1408291 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF29637_RS06800 (CDIF29637_01338) | - | 1408405..1408851 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDIF29637_RS06805 (CDIF29637_01339) | - | 1408878..1409045 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF29637_RS06810 (CDIF29637_01340) | - | 1409045..1411498 (+) | 2454 | WP_021401209.1 | hypothetical protein | - |
| CDIF29637_RS06815 (CDIF29637_01341) | - | 1411498..1411920 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| CDIF29637_RS06820 (CDIF29637_01342) | - | 1412202..1413731 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| CDIF29637_RS06825 (CDIF29637_01343) | - | 1413747..1414073 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDIF29637_RS06830 (CDIF29637_01344) | - | 1414073..1414501 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| CDIF29637_RS06835 (CDIF29637_01345) | - | 1414494..1415546 (+) | 1053 | WP_021401201.1 | baseplate J/gp47 family protein | - |
| CDIF29637_RS06840 (CDIF29637_01346) | - | 1415543..1416241 (+) | 699 | WP_118701618.1 | putative phage tail protein | - |
| CDIF29637_RS06845 (CDIF29637_01347) | - | 1416242..1417228 (+) | 987 | WP_009902440.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=185841 CDIF29637_RS06625 WP_003428218.1 1373755..1374801(+) (recA) [Clostridioides difficile strain DSM 29637]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=185841 CDIF29637_RS06625 WP_003428218.1 1373755..1374801(+) (recA) [Clostridioides difficile strain DSM 29637]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.