Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF29629_RS06965 | Genome accession | NZ_CP016104 |
| Coordinates | 1450111..1451157 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 29629 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1424609..1486372 | 1450111..1451157 | within | 0 |
Gene organization within MGE regions
Location: 1424609..1486372
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29629_RS06855 (CDIF29629_01358) | rimP | 1428357..1428818 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| CDIF29629_RS06860 (CDIF29629_01359) | nusA | 1428848..1430002 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF29629_RS06865 (CDIF29629_01360) | rnpM | 1430009..1430290 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| CDIF29629_RS06870 (CDIF29629_01361) | - | 1430280..1430591 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF29629_RS06875 (CDIF29629_01362) | infB | 1430613..1432553 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| CDIF29629_RS06880 (CDIF29629_01363) | rbfA | 1432596..1432976 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF29629_RS06885 (CDIF29629_01364) | - | 1432957..1433940 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| CDIF29629_RS06890 (CDIF29629_01365) | truB | 1433953..1434858 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF29629_RS06895 (CDIF29629_01366) | - | 1434989..1435918 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF29629_RS06905 (CDIF29629_01367) | rpsO | 1436022..1436279 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF29629_RS06910 (CDIF29629_01368) | - | 1436519..1437364 (+) | 846 | WP_022616925.1 | DegV family protein | - |
| CDIF29629_RS06915 (CDIF29629_01369) | pnp | 1437489..1439600 (+) | 2112 | WP_022616926.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF29629_RS06920 (CDIF29629_01370) | - | 1439866..1440609 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| CDIF29629_RS06925 (CDIF29629_01371) | - | 1440767..1442014 (+) | 1248 | WP_022616927.1 | M16 family metallopeptidase | - |
| CDIF29629_RS06930 (CDIF29629_01372) | - | 1442049..1442294 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF29629_RS06935 (CDIF29629_01373) | dapG | 1442304..1443527 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| CDIF29629_RS06940 (CDIF29629_01374) | - | 1443640..1444374 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF29629_RS06945 (CDIF29629_01375) | - | 1444497..1446905 (+) | 2409 | WP_070117387.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF29629_RS06950 (CDIF29629_01376) | mnmH | 1446908..1447966 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF29629_RS06955 (CDIF29629_01377) | rimO | 1447960..1449294 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF29629_RS06960 (CDIF29629_01378) | pgsA | 1449281..1449823 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF29629_RS06965 (CDIF29629_01379) | recA | 1450111..1451157 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF29629_RS06970 (CDIF29629_01380) | rny | 1451333..1452874 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF29629_RS06975 (CDIF29629_01381) | - | 1453509..1455290 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| CDIF29629_RS06980 (CDIF29629_01382) | lepB | 1455372..1455902 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| CDIF29629_RS06985 (CDIF29629_01383) | - | 1455942..1456766 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF29629_RS06990 (CDIF29629_01384) | - | 1457023..1457931 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF29629_RS06995 (CDIF29629_01385) | purB | 1458075..1459520 (+) | 1446 | WP_070117388.1 | adenylosuccinate lyase | - |
| CDIF29629_RS07000 (CDIF29629_01386) | - | 1459831..1460283 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29629_RS07005 (CDIF29629_01387) | - | 1460687..1462264 (+) | 1578 | WP_074048084.1 | PTS transporter subunit EIIC | - |
| CDIF29629_RS07010 (CDIF29629_01388) | - | 1462412..1463164 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF29629_RS07015 (CDIF29629_01389) | - | 1463297..1464664 (+) | 1368 | WP_330388089.1 | 6-phospho-alpha-glucosidase | - |
| CDIF29629_RS07020 (CDIF29629_01390) | - | 1464755..1465951 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF29629_RS07025 (CDIF29629_01391) | galT | 1466336..1467286 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF29629_RS07030 (CDIF29629_01392) | - | 1467439..1468191 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| CDIF29629_RS07035 (CDIF29629_01393) | - | 1468283..1469059 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF29629_RS07040 (CDIF29629_01394) | - | 1469374..1471272 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF29629_RS07045 (CDIF29629_01395) | - | 1471400..1472521 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF29629_RS07050 (CDIF29629_01396) | - | 1472720..1473052 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF29629_RS07055 (CDIF29629_01397) | - | 1473039..1474097 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| CDIF29629_RS07060 (CDIF29629_01398) | - | 1474090..1475160 (+) | 1071 | WP_070117391.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF29629_RS07065 (CDIF29629_01399) | - | 1475262..1475798 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF29629_RS07070 (CDIF29629_01400) | - | 1475914..1476621 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF29629_RS07075 (CDIF29629_01401) | - | 1476623..1477339 (+) | 717 | WP_022616933.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF29629_RS07080 (CDIF29629_01402) | - | 1477341..1478099 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF29629_RS07085 (CDIF29629_01403) | - | 1478234..1479622 (+) | 1389 | WP_022616934.1 | two-component system sensor histidine kinase | - |
| CDIF29629_RS07090 (CDIF29629_01404) | - | 1479698..1480519 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF29629_RS07095 (CDIF29629_01405) | - | 1480770..1481924 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF29629_RS07100 (CDIF29629_01406) | - | 1482107..1482307 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF29629_RS07105 (CDIF29629_01407) | - | 1482728..1483156 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF29629_RS07110 (CDIF29629_01408) | - | 1483299..1484054 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| CDIF29629_RS07120 (CDIF29629_01410) | - | 1484755..1485261 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29629_RS07125 (CDIF29629_01411) | - | 1485343..1485663 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF29629_RS07130 (CDIF29629_01412) | - | 1485832..1486029 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=185824 CDIF29629_RS06965 WP_003428218.1 1450111..1451157(+) (recA) [Clostridioides difficile strain DSM 29629]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=185824 CDIF29629_RS06965 WP_003428218.1 1450111..1451157(+) (recA) [Clostridioides difficile strain DSM 29629]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.