Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF29627_RS07065 | Genome accession | NZ_CP016102 |
| Coordinates | 1461322..1462368 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 29627 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1435808..1497584 | 1461322..1462368 | within | 0 |
Gene organization within MGE regions
Location: 1435808..1497584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29627_RS06955 (CDIF29627_01369) | rimP | 1439556..1440017 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| CDIF29627_RS06960 (CDIF29627_01370) | nusA | 1440047..1441201 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF29627_RS06965 (CDIF29627_01371) | rnpM | 1441208..1441489 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| CDIF29627_RS06970 (CDIF29627_01372) | - | 1441479..1441790 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF29627_RS06975 (CDIF29627_01373) | infB | 1441812..1443752 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| CDIF29627_RS06980 (CDIF29627_01374) | rbfA | 1443795..1444175 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF29627_RS06985 (CDIF29627_01375) | - | 1444156..1445139 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| CDIF29627_RS06990 (CDIF29627_01376) | truB | 1445152..1446057 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF29627_RS06995 (CDIF29627_01377) | - | 1446188..1447117 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF29627_RS07005 (CDIF29627_01378) | rpsO | 1447221..1447478 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF29627_RS07010 (CDIF29627_01379) | - | 1447718..1448569 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| CDIF29627_RS07015 (CDIF29627_01380) | pnp | 1448694..1450805 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF29627_RS07020 (CDIF29627_01381) | - | 1451071..1451814 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| CDIF29627_RS07025 (CDIF29627_01382) | - | 1451972..1453219 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| CDIF29627_RS07030 (CDIF29627_01383) | - | 1453254..1453499 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF29627_RS07035 (CDIF29627_01384) | dapG | 1453509..1454732 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| CDIF29627_RS07040 (CDIF29627_01385) | - | 1454845..1455579 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF29627_RS07045 (CDIF29627_01386) | - | 1455702..1458116 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF29627_RS07050 (CDIF29627_01387) | mnmH | 1458119..1459177 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF29627_RS07055 (CDIF29627_01388) | rimO | 1459171..1460505 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF29627_RS07060 (CDIF29627_01389) | pgsA | 1460492..1461034 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF29627_RS07065 (CDIF29627_01390) | recA | 1461322..1462368 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF29627_RS07070 (CDIF29627_01391) | rny | 1462544..1464085 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF29627_RS07075 (CDIF29627_01392) | - | 1464720..1466501 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| CDIF29627_RS07080 (CDIF29627_01393) | lepB | 1466583..1467113 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| CDIF29627_RS07085 (CDIF29627_01394) | - | 1467153..1467977 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF29627_RS07090 (CDIF29627_01395) | - | 1468234..1469142 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF29627_RS07095 (CDIF29627_01396) | purB | 1469286..1470731 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| CDIF29627_RS07100 (CDIF29627_01397) | - | 1471042..1471494 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29627_RS07105 (CDIF29627_01398) | - | 1471898..1473475 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| CDIF29627_RS07110 (CDIF29627_01399) | - | 1473623..1474375 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF29627_RS07115 (CDIF29627_01400) | - | 1474514..1475875 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| CDIF29627_RS07120 (CDIF29627_01401) | - | 1475966..1477162 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF29627_RS07125 (CDIF29627_01402) | galT | 1477547..1478497 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF29627_RS07130 (CDIF29627_01403) | - | 1478650..1479402 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| CDIF29627_RS07135 (CDIF29627_01404) | - | 1479494..1480270 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| CDIF29627_RS07140 (CDIF29627_01405) | - | 1480585..1482483 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF29627_RS07145 (CDIF29627_01406) | - | 1482611..1483732 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF29627_RS07150 (CDIF29627_01407) | - | 1483931..1484263 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF29627_RS07155 (CDIF29627_01408) | - | 1484250..1485308 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| CDIF29627_RS07160 (CDIF29627_01409) | - | 1485301..1486371 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF29627_RS07165 (CDIF29627_01410) | - | 1486473..1487009 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF29627_RS07170 (CDIF29627_01411) | - | 1487125..1487832 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF29627_RS07175 (CDIF29627_01412) | - | 1487834..1488550 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF29627_RS07180 (CDIF29627_01413) | - | 1488552..1489310 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF29627_RS07185 (CDIF29627_01414) | - | 1489445..1490833 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| CDIF29627_RS07190 (CDIF29627_01415) | - | 1490909..1491730 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF29627_RS07195 (CDIF29627_01416) | - | 1491981..1493135 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| CDIF29627_RS07200 (CDIF29627_01417) | - | 1493318..1493518 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF29627_RS07205 (CDIF29627_01418) | - | 1493939..1494367 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF29627_RS07210 (CDIF29627_01419) | - | 1494510..1495265 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| CDIF29627_RS07215 (CDIF29627_01420) | - | 1495386..1495802 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| CDIF29627_RS07220 (CDIF29627_01421) | - | 1495966..1496472 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29627_RS07225 (CDIF29627_01422) | - | 1496554..1496874 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF29627_RS07230 (CDIF29627_01423) | - | 1497043..1497240 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=185808 CDIF29627_RS07065 WP_003428218.1 1461322..1462368(+) (recA) [Clostridioides difficile strain DSM 29627]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=185808 CDIF29627_RS07065 WP_003428218.1 1461322..1462368(+) (recA) [Clostridioides difficile strain DSM 29627]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.