Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | A8L59_RS05915 | Genome accession | NZ_CP015852 |
| Coordinates | 1337676..1338734 (+) | Length | 352 a.a. |
| NCBI ID | WP_064586244.1 | Uniprot ID | - |
| Organism | Pseudomonas koreensis strain CRS05-R5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1297753..1339211 | 1337676..1338734 | within | 0 |
Gene organization within MGE regions
Location: 1297753..1339211
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8L59_RS05670 (A8L59_05665) | - | 1297753..1298631 (+) | 879 | WP_064586201.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| A8L59_RS05675 (A8L59_05670) | rpoS | 1298737..1299747 (+) | 1011 | WP_038357938.1 | RNA polymerase sigma factor RpoS | - |
| A8L59_RS05680 (A8L59_05675) | fdxA | 1300369..1300692 (-) | 324 | WP_003222178.1 | ferredoxin FdxA | - |
| A8L59_RS05685 (A8L59_05680) | mutS | 1300856..1303438 (-) | 2583 | WP_064586202.1 | DNA mismatch repair protein MutS | - |
| A8L59_RS05690 (A8L59_05685) | - | 1303649..1304383 (+) | 735 | WP_047291917.1 | LexA family transcriptional regulator | - |
| A8L59_RS05695 (A8L59_05690) | - | 1304906..1305244 (+) | 339 | WP_011332709.1 | phage holin family protein | - |
| A8L59_RS05700 (A8L59_05695) | - | 1305315..1305836 (+) | 522 | WP_064586203.1 | hypothetical protein | - |
| A8L59_RS05705 (A8L59_05700) | - | 1305838..1306446 (+) | 609 | WP_064586204.1 | phage baseplate assembly protein V | - |
| A8L59_RS05710 (A8L59_05705) | - | 1306461..1306793 (+) | 333 | WP_003222189.1 | phage baseplate protein | - |
| A8L59_RS05715 (A8L59_05710) | - | 1306790..1307785 (+) | 996 | WP_064586205.1 | baseplate J/gp47 family protein | - |
| A8L59_RS05720 (A8L59_05715) | - | 1307782..1308435 (+) | 654 | WP_064586206.1 | phage tail protein I | - |
| A8L59_RS05725 (A8L59_05720) | - | 1308505..1309035 (+) | 531 | WP_064586207.1 | hypothetical protein | - |
| A8L59_RS05730 (A8L59_05725) | - | 1309116..1309736 (+) | 621 | WP_064586208.1 | hypothetical protein | - |
| A8L59_RS05735 (A8L59_05730) | - | 1309746..1310003 (+) | 258 | WP_232519474.1 | tail fiber assembly protein | - |
| A8L59_RS05740 (A8L59_05735) | - | 1310090..1310275 (+) | 186 | WP_064586209.1 | hypothetical protein | - |
| A8L59_RS05745 (A8L59_05740) | - | 1310278..1311444 (+) | 1167 | WP_064586210.1 | hypothetical protein | - |
| A8L59_RS05750 (A8L59_05745) | - | 1311444..1311950 (+) | 507 | WP_064586211.1 | phage major tail tube protein | - |
| A8L59_RS05755 (A8L59_05750) | - | 1312105..1312686 (+) | 582 | WP_064586212.1 | phage tail assembly protein | - |
| A8L59_RS05760 (A8L59_05755) | - | 1312815..1315064 (+) | 2250 | WP_064586213.1 | phage tail tape measure protein | - |
| A8L59_RS05765 (A8L59_05760) | - | 1315064..1315447 (+) | 384 | WP_064586214.1 | phage tail protein | - |
| A8L59_RS05770 (A8L59_05765) | - | 1315440..1315652 (+) | 213 | WP_064586215.1 | tail protein X | - |
| A8L59_RS05775 (A8L59_05770) | - | 1315662..1316690 (+) | 1029 | WP_064586216.1 | hypothetical protein | - |
| A8L59_RS05780 (A8L59_05775) | - | 1316841..1317425 (+) | 585 | WP_064586217.1 | phage tail terminator protein | - |
| A8L59_RS05785 (A8L59_05780) | - | 1317422..1317604 (+) | 183 | WP_041072263.1 | DUF2635 domain-containing protein | - |
| A8L59_RS05790 (A8L59_05785) | - | 1317604..1319100 (+) | 1497 | WP_064586218.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| A8L59_RS05795 (A8L59_05790) | - | 1319168..1319515 (+) | 348 | WP_003222224.1 | phage tail tube protein | - |
| A8L59_RS05800 (A8L59_05795) | - | 1319512..1319808 (+) | 297 | WP_003222226.1 | phage tail assembly protein | - |
| A8L59_RS05805 (A8L59_05800) | - | 1319939..1321837 (+) | 1899 | WP_064586219.1 | hypothetical protein | - |
| A8L59_RS05810 (A8L59_05805) | - | 1321824..1323059 (+) | 1236 | WP_064586220.1 | DNA circularization protein | - |
| A8L59_RS05815 (A8L59_05810) | - | 1323063..1324112 (+) | 1050 | WP_064586221.1 | phage baseplate assembly protein | - |
| A8L59_RS05820 (A8L59_05815) | - | 1324249..1324758 (+) | 510 | WP_064586222.1 | phage baseplate assembly protein V | - |
| A8L59_RS05825 (A8L59_05820) | - | 1324758..1325156 (+) | 399 | WP_054047083.1 | phage GP46 family protein | - |
| A8L59_RS05830 (A8L59_05825) | - | 1325146..1326192 (+) | 1047 | WP_064586223.1 | baseplate J/gp47 family protein | - |
| A8L59_RS05835 (A8L59_05830) | - | 1326180..1326779 (+) | 600 | WP_064586224.1 | YmfQ family protein | - |
| A8L59_RS05840 (A8L59_05835) | - | 1326794..1327672 (+) | 879 | WP_064586225.1 | gp53-like domain-containing protein | - |
| A8L59_RS05845 (A8L59_05840) | - | 1327685..1328104 (+) | 420 | WP_064586226.1 | tail fiber assembly protein | - |
| A8L59_RS05850 (A8L59_05845) | - | 1328175..1329326 (+) | 1152 | WP_064586227.1 | hypothetical protein | - |
| A8L59_RS05855 (A8L59_05850) | - | 1329323..1329838 (+) | 516 | WP_064586228.1 | hypothetical protein | - |
| A8L59_RS05860 (A8L59_05855) | - | 1329975..1331015 (+) | 1041 | WP_064586229.1 | hypothetical protein | - |
| A8L59_RS05865 (A8L59_05860) | - | 1331059..1331640 (+) | 582 | WP_064586230.1 | tail fiber assembly protein | - |
| A8L59_RS05870 (A8L59_05865) | - | 1331722..1332645 (+) | 924 | WP_064586231.1 | hypothetical protein | - |
| A8L59_RS05875 (A8L59_05870) | - | 1332645..1333112 (+) | 468 | WP_064586232.1 | phage tail assembly chaperone | - |
| A8L59_RS05880 (A8L59_05875) | - | 1333154..1334050 (+) | 897 | WP_064586233.1 | gp53-like domain-containing protein | - |
| A8L59_RS05885 (A8L59_05880) | - | 1334051..1334497 (+) | 447 | WP_064586235.1 | phage tail assembly chaperone | - |
| A8L59_RS05890 (A8L59_05885) | - | 1334516..1335673 (+) | 1158 | WP_064586237.1 | hypothetical protein | - |
| A8L59_RS05895 (A8L59_05890) | - | 1335673..1335927 (+) | 255 | WP_064586239.1 | hypothetical protein | - |
| A8L59_RS05900 (A8L59_05895) | - | 1335961..1336527 (+) | 567 | WP_064586240.1 | glycoside hydrolase family 19 protein | - |
| A8L59_RS05905 (A8L59_05900) | - | 1336506..1337024 (+) | 519 | WP_064586242.1 | lysis system i-spanin subunit Rz | - |
| A8L59_RS05910 (A8L59_05905) | - | 1337092..1337592 (+) | 501 | WP_064589962.1 | CinA family protein | - |
| A8L59_RS05915 (A8L59_05910) | recA | 1337676..1338734 (+) | 1059 | WP_064586244.1 | recombinase RecA | Machinery gene |
| A8L59_RS05920 (A8L59_05915) | recX | 1338744..1339211 (+) | 468 | WP_064586245.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37535.12 Da Isoelectric Point: 5.5426
>NTDB_id=182495 A8L59_RS05915 WP_064586244.1 1337676..1338734(+) (recA) [Pseudomonas koreensis strain CRS05-R5]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLAPAADVKASATRDKVDEMAEADIDV
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLAPAADVKASATRDKVDEMAEADIDV
Nucleotide
Download Length: 1059 bp
>NTDB_id=182495 A8L59_RS05915 WP_064586244.1 1337676..1338734(+) (recA) [Pseudomonas koreensis strain CRS05-R5]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCATCCATCTCCACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCTTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTGTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TCAAGTTCTATGCTTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTACTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATTGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCGCAGACAACCCGGAAATCGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTGGCACCAGCAGCAGACGTCAAGGCTTCGGCGACCCGTGACAAGGTCGACGAGATGGCCGA
GGCCGACATCGACGTTTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCATCCATCTCCACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCTTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTGTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TCAAGTTCTATGCTTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTACTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATTGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCGCAGACAACCCGGAAATCGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTGGCACCAGCAGCAGACGTCAAGGCTTCGGCGACCCGTGACAAGGTCGACGAGATGGCCGA
GGCCGACATCGACGTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.