Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A7983_RS12950 Genome accession   NZ_CP015750
Coordinates   2855283..2856356 (+) Length   357 a.a.
NCBI ID   WP_005972151.1    Uniprot ID   A0AAW3EKL8
Organism   Pectobacterium wasabiae CFBP 3304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2850283..2861356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7983_RS12925 (A7983_12920) - 2850610..2852208 (-) 1599 WP_005972139.1 sensor domain-containing diguanylate cyclase -
  A7983_RS12930 (A7983_12925) - 2852370..2853044 (-) 675 WP_005972142.1 MarC family NAAT transporter -
  A7983_RS12935 (A7983_12930) - 2853128..2853616 (-) 489 WP_005972145.1 SRPBCC family protein -
  A7983_RS12940 (A7983_12935) - 2854099..2854434 (+) 336 WP_005972147.1 hypothetical protein -
  A7983_RS12945 (A7983_12940) pncC 2854681..2855175 (+) 495 WP_005972149.1 nicotinamide-nucleotide amidase -
  A7983_RS12950 (A7983_12945) recA 2855283..2856356 (+) 1074 WP_005972151.1 recombinase RecA Machinery gene
  A7983_RS12955 (A7983_12950) recX 2856402..2856890 (+) 489 WP_005972153.1 recombination regulator RecX -
  A7983_RS12960 (A7983_12955) alaS 2857028..2859655 (+) 2628 WP_005972155.1 alanine--tRNA ligase -
  A7983_RS12965 (A7983_12960) csrA 2859987..2860172 (+) 186 WP_005972168.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38216.68 Da        Isoelectric Point: 5.0681

>NTDB_id=181936 A7983_RS12950 WP_005972151.1 2855283..2856356(+) (recA) [Pectobacterium wasabiae CFBP 3304]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAIAAEL
DKKLREMLLHKGNELTPAAAGNSHDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=181936 A7983_RS12950 WP_005972151.1 2855283..2856356(+) (recA) [Pectobacterium wasabiae CFBP 3304]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGTTCTTTGTCCCTTGATATTGCTCTGGGAG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACCACGCTGACCTTACAGGTG
ATTGCCGCTGCTCAGCGCGAAGGCAAAACCTGTGCGTTCATCGATGCTGAACATGCGTTGGACCCGATTTATGCGAAAAA
ACTTGGCGTAGATATTGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAACAAGCACTGGAGATCTGTGATGCACTCA
CGCGCTCTGGCGCTGTTGACGTTATCATTGTCGACTCTGTTGCAGCCTTGACACCAAAAGCTGAAATTGAAGGCGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCTATGCGCAAATTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACTACCGGTGGTA
ACGCACTGAAATTTTATGCCTCTGTTCGTCTGGATATCCGTCGTACTGGCGCTATCAAGGACGGTGAAGAAGTTGTCGGT
AGCGAAACTCGCGTTAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAATTCCAAATTTTGTATGGTGA
AGGCATCAATATCCACGGTGAGTTGGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCGGGTGCATGGTATAGCT
ATAACGGCGACAAGATCGGTCAGGGTAAAGCAAACGCCTGCAATTTCCTGAAAGAGAATCCAGCGATTGCTGCCGAACTG
GATAAAAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTAACACCTGCCGCAGCAGGGAATAGCCATGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.817

99.44

0.824
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.817

99.44

0.824
  recA Pseudomonas stutzeri DSM 10701

74.041

94.958

0.703
  recA Glaesserella parasuis strain SC1401

69.516

98.319

0.683
  recA Acinetobacter baylyi ADP1

70.52

96.919

0.683
  recA Acinetobacter baumannii D1279779

72.424

92.437

0.669
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae TIGR4

60.282

99.44

0.599
  recA Streptococcus pneumoniae Rx1

60.282

99.44

0.599
  recA Streptococcus pneumoniae D39

60.282

99.44

0.599
  recA Streptococcus pneumoniae R6

60.282

99.44

0.599
  recA Helicobacter pylori strain NCTC11637

62.997

91.597

0.577
  recA Helicobacter pylori 26695

62.691

91.597

0.574
  recA Streptococcus mutans UA159

62.769

91.036

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.597

93.838

0.569
  recA Streptococcus mitis SK321

62.848

90.476

0.569
  recA Streptococcus mitis NCTC 12261

62.848

90.476

0.569
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.476

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535

Multiple sequence alignment