Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A3K93_RS05315 Genome accession   NZ_CP015594
Coordinates   1138706..1139746 (-) Length   346 a.a.
NCBI ID   WP_067729590.1    Uniprot ID   A0A172YP56
Organism   Acinetobacter sp. NCu2D-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133706..1144746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS05285 (A3K93_05285) lpxD 1134100..1135170 (+) 1071 WP_067729581.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  A3K93_RS05290 (A3K93_05290) fabZ 1135175..1135660 (+) 486 WP_171255092.1 3-hydroxyacyl-ACP dehydratase FabZ -
  A3K93_RS05295 (A3K93_05295) lpxA 1135657..1136445 (+) 789 WP_067729585.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  A3K93_RS05300 (A3K93_05300) - 1136501..1137368 (-) 868 Protein_1007 YbgF trimerization domain-containing protein -
  A3K93_RS05310 (A3K93_05310) - 1138003..1138617 (-) 615 WP_067729588.1 regulatory protein RecX -
  A3K93_RS05315 (A3K93_05315) recA 1138706..1139746 (-) 1041 WP_067729590.1 recombinase RecA Machinery gene
  A3K93_RS05320 (A3K93_05320) - 1139891..1140331 (-) 441 WP_067729592.1 S4 domain-containing protein -
  A3K93_RS05325 (A3K93_05325) - 1140324..1141010 (-) 687 WP_067729594.1 HAD-IA family hydrolase -
  A3K93_RS05330 (A3K93_05330) - 1141023..1141871 (+) 849 WP_067729596.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  A3K93_RS05335 (A3K93_05335) - 1141934..1142683 (+) 750 WP_067731677.1 phosphoglycerate mutase family protein -
  A3K93_RS14955 - 1142795..1142935 (+) 141 WP_171255054.1 hypothetical protein -
  A3K93_RS05340 (A3K93_05340) rpsT 1143041..1143307 (-) 267 WP_067729598.1 30S ribosomal protein S20 -
  A3K93_RS05345 (A3K93_05345) - 1143521..1144183 (+) 663 WP_067729600.1 NAD(P)H-binding protein -
  A3K93_RS05350 (A3K93_05350) rraA 1144199..1144711 (+) 513 WP_067729602.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37566.02 Da        Isoelectric Point: 5.0354

>NTDB_id=181240 A3K93_RS05315 WP_067729590.1 1138706..1139746(-) (recA) [Acinetobacter sp. NCu2D-2]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVHKAGAWYSYQGDKIGQGKNNTIRYLEENTELAQTIEK
LIREQLLTKAVPVEDTDEEEPDLLDA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=181240 A3K93_RS05315 WP_067729590.1 1138706..1139746(-) (recA) [Acinetobacter sp. NCu2D-2]
ATGGATGATAATAAAAGCAAGGCGCTGAATGCTGCCTTAAGCCAAATTGAAAAACAATTTGGTAAAAACACAGTAATGCG
TCTTGGTGACAATACCGTACAAGCGGTTGAAGCTGTCTCTACAGGCTCTTTAACACTTGATATCGCGCTCGGTATTGGTG
GTTTACCAAAAGGTCGTATCGTAGAAATTTATGGTCCTGAATCATCAGGTAAAACGACTATGACATTGCAAGCGATTGCA
CAATGTCAAAAAGCTGGTGGTACTTGCGCGTTTATCGATGCCGAACATGCACTAGACCCACAATATGCGCGTAAACTCGG
TGTAGATATCGACAACCTTTTGGTGTCGCAACCTGACCACGGTGAGCAAGCCCTTGAAATTGCAGACATGTTGGTACGTT
CAGGTGCGATTGACCTGATTGTTGTCGACTCTGTTGCTGCTCTTACCCCACGTGCTGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGTCTACAAGCACGTTTAATGAGCCAAGCACTACGTAAAATTACCGGTAATGCCAAGCGTTCAAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAACGCAC
TGAAATTCTATGCGTCTGTTCGTCTTGATATCCGCCGTATTGGTCAAGTCAAAGAAGGCGATGAAATTGTCGGTTCAGAA
ACCAAAGTCAAAGTCGTGAAGAACAAAATGGCACCTCCTTTCAAAGAAGCGCTATTCCAAATTCTTTACGGTAAAGGTGT
GAACCATCTTGGTGAACTGATCGATCTTGCGGTACAACAAGAGATTGTTCACAAAGCAGGTGCTTGGTATTCATATCAAG
GTGACAAAATCGGTCAAGGTAAAAATAATACCATTCGTTACCTAGAAGAAAATACTGAGCTTGCTCAAACTATTGAAAAG
TTGATTCGCGAACAGTTATTAACTAAAGCCGTTCCTGTTGAAGATACTGACGAAGAAGAACCCGATTTACTTGATGCTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172YP56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.404

100

0.922
  recA Acinetobacter baumannii D1279779

91.04

100

0.91
  recA Pseudomonas stutzeri DSM 10701

73.789

100

0.749
  recA Vibrio cholerae strain A1552

74.695

94.798

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.798

0.708
  recA Glaesserella parasuis strain SC1401

68.314

99.422

0.679
  recA Ralstonia pseudosolanacearum GMI1000

73.312

89.884

0.659
  recA Neisseria gonorrhoeae MS11

65.23

100

0.656
  recA Neisseria gonorrhoeae MS11

65.23

100

0.656
  recA Neisseria gonorrhoeae strain FA1090

65.23

100

0.656
  recA Helicobacter pylori strain NCTC11637

61.808

99.133

0.613
  recA Helicobacter pylori 26695

61.516

99.133

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

94.509

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

96.532

0.607
  recA Streptococcus pyogenes NZ131

58.192

100

0.595
  recA Streptococcus pneumoniae TIGR4

62.27

94.22

0.587
  recA Streptococcus pneumoniae Rx1

62.27

94.22

0.587
  recA Streptococcus pneumoniae D39

62.27

94.22

0.587
  recA Streptococcus pneumoniae R6

62.27

94.22

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

91.04

0.587
  recA Streptococcus mitis NCTC 12261

61.963

94.22

0.584
  recA Streptococcus mitis SK321

61.963

94.22

0.584
  recA Streptococcus mutans UA159

61.468

94.509

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

93.064

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

56.812

99.711

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.353

0.552

Multiple sequence alignment