Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A6044_RS07350 Genome accession   NZ_CP015432
Coordinates   1486174..1487292 (-) Length   372 a.a.
NCBI ID   WP_064083108.1    Uniprot ID   -
Organism   [Haemophilus] ducreyi strain GHA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1481174..1492292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6044_RS07305 (A6044_07330) ubiK 1482612..1482863 (-) 252 WP_010944435.1 ubiquinone biosynthesis accessory factor UbiK -
  A6044_RS07325 (A6044_07350) aroE 1483429..1484259 (-) 831 WP_010944433.1 shikimate dehydrogenase -
  A6044_RS07330 (A6044_07355) - 1484259..1484813 (-) 555 WP_010944432.1 Sua5/YciO/YrdC/YwlC family protein -
  A6044_RS07335 (A6044_07360) - 1484806..1485342 (-) 537 WP_010944431.1 type I DNA topoisomerase -
  A6044_RS07340 (A6044_07365) yqfB 1485339..1485647 (-) 309 WP_010944430.1 N(4)-acetylcytidine aminohydrolase -
  A6044_RS07345 (A6044_07370) recX 1485640..1486095 (-) 456 WP_010944429.1 recombination regulator RecX -
  A6044_RS07350 (A6044_07375) recA 1486174..1487292 (-) 1119 WP_064083108.1 recombinase RecA Machinery gene
  A6044_RS07355 (A6044_07380) - 1487411..1488010 (-) 600 WP_010944427.1 aminotransferase class IV family protein -
  A6044_RS07360 (A6044_07385) - 1487988..1488956 (-) 969 WP_064088608.1 aminodeoxychorismate synthase component I -
  A6044_RS07365 (A6044_07390) rmuC 1489094..1490722 (+) 1629 WP_010944425.1 DNA recombination protein RmuC -
  A6044_RS07370 (A6044_07395) - 1490703..1491290 (+) 588 WP_010944424.1 anthranilate synthase component II -
  A6044_RS07375 (A6044_07400) - 1491345..1491794 (+) 450 WP_010944423.1 DUF302 domain-containing protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40202.98 Da        Isoelectric Point: 4.6136

>NTDB_id=179607 A6044_RS07350 WP_064083108.1 1486174..1487292(-) (recA) [[Haemophilus] ducreyi strain GHA5]
MAADKKAQKNTATKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDAALGIGGLPMGRIVEIY
GPESSGKTTLTLSVIAQAQRIGKTCAFIDAEHALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVDS
VAALTPKAEIEGDMGDSYMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI
RRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAEANGFIQKAGAWFSYNGTKIGQGKNNA
IKWLKENPEVAEKIEQEIRNLLILTPDQPASEKLELDVNDESDFDEAFEEQE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=179607 A6044_RS07350 WP_064083108.1 1486174..1487292(-) (recA) [[Haemophilus] ducreyi strain GHA5]
ATGGCAGCGGATAAAAAAGCCCAAAAGAATACAGCAACTAAACAGATTGATCCCGAACAAAAAGAAAAAGCATTAGCAGC
AGCACTGGCTCAAATTGAAAAGCAATTTGGTAAAGGATCTATTATGCGTTTGGGCGATACGCAAGCACTTGATATTGAAG
CAGTTTCCACCGGTTCAATTGGTTTAGATGCTGCATTAGGTATTGGTGGTTTGCCAATGGGACGAATTGTAGAAATCTAC
GGCCCCGAATCATCAGGGAAAACCACGTTAACTTTATCTGTCATTGCTCAAGCGCAAAGAATAGGCAAAACTTGTGCATT
TATTGATGCTGAACATGCGCTGGATCCCGTTTATGCACGTAAATTAGGCGTAGATACCGATGCCTTACTTATTTCACAAC
CTGATAATGGCGAACAAGCGCTTGAAATTTGTGATGCATTAGTCCGCTCAGGTGCGGTTGACGTCATTATTGTTGACTCA
GTTGCCGCATTAACACCAAAAGCTGAAATTGAAGGCGATATGGGTGATTCGTATATGGGCTTACAAGCTCGTTTAATGTC
ACAAGCATTACGAAAATTAACCGCTAATATTAAAGCCACTAATTGCCTAGTCGTTTTCATTAATCAAATTCGGATGAAAA
TCGGCGTAATGTTTGGTAATCCAGAAACGACGACAGGCGGTAATGCACTTAAATTCTATGCCTCTGTCCGCCTTGATATT
CGTCGTTCGGGTGTTGTAAAAGATGGTGATGAAGTGGTTGGCAGTGAAACCAAAGTTAAGATCGTTAAAAATAAAGTAGC
ACCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGAGAAGGCATTGCTCGAATGAATGAATTACTTATTCTTGCTG
AAGCGAATGGCTTTATTCAAAAAGCAGGAGCATGGTTCTCATATAATGGTACTAAAATTGGTCAAGGCAAAAATAATGCA
ATTAAATGGTTGAAAGAAAATCCTGAAGTGGCAGAGAAAATTGAACAAGAGATTCGCAATTTATTAATTTTAACACCAGA
TCAGCCAGCTTCTGAAAAACTTGAGTTAGATGTAAATGACGAAAGTGATTTTGATGAAGCGTTTGAGGAGCAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

83.871

100

0.839
  recA Acinetobacter baumannii D1279779

69.801

94.355

0.659
  recA Pseudomonas stutzeri DSM 10701

71.345

91.935

0.656
  recA Acinetobacter baylyi ADP1

72.239

90.054

0.651
  recA Vibrio cholerae strain A1552

73.252

88.441

0.648
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.252

88.441

0.648
  recA Neisseria gonorrhoeae MS11

70.37

87.097

0.613
  recA Neisseria gonorrhoeae MS11

70.37

87.097

0.613
  recA Neisseria gonorrhoeae strain FA1090

70.37

87.097

0.613
  recA Ralstonia pseudosolanacearum GMI1000

70.794

84.677

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.545

88.71

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.315

90.591

0.565
  recA Streptococcus pneumoniae R6

58.146

95.699

0.556
  recA Streptococcus pneumoniae TIGR4

58.146

95.699

0.556
  recA Streptococcus pneumoniae Rx1

58.146

95.699

0.556
  recA Streptococcus pneumoniae D39

58.146

95.699

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.158

86.828

0.548
  recA Streptococcus mitis SK321

60.237

90.591

0.546
  recA Streptococcus mutans UA159

60.423

88.978

0.538
  recA Helicobacter pylori strain NCTC11637

58.651

91.667

0.538
  recA Streptococcus mitis NCTC 12261

61.42

87.097

0.535
  recA Helicobacter pylori 26695

58.358

91.667

0.535
  recA Bacillus subtilis subsp. subtilis str. 168

62.382

85.753

0.535
  recA Streptococcus pyogenes NZ131

58.112

91.129

0.53
  recA Lactococcus lactis subsp. cremoris KW2

57.143

92.204

0.527
  recA Latilactobacillus sakei subsp. sakei 23K

57.321

86.29

0.495

Multiple sequence alignment