Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   dmul_RS04870 Genome accession   NZ_CP015381
Coordinates   1150048..1151085 (-) Length   345 a.a.
NCBI ID   WP_020876955.1    Uniprot ID   S7V2K4
Organism   Desulfococcus multivorans strain DSM 2059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145048..1156085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  dmul_RS04855 (Dmul_10200) mazG 1145690..1146514 (-) 825 WP_020876952.1 nucleoside triphosphate pyrophosphohydrolase -
  dmul_RS04860 (Dmul_10210) - 1146558..1147265 (-) 708 WP_020876953.1 flavodoxin family protein -
  dmul_RS04865 (Dmul_10220) alaS 1147333..1149957 (-) 2625 WP_020876954.1 alanine--tRNA ligase -
  dmul_RS04870 (Dmul_10230) recA 1150048..1151085 (-) 1038 WP_020876955.1 recombinase RecA Machinery gene
  dmul_RS04875 (Dmul_10240) thpR 1151257..1151826 (-) 570 WP_020876956.1 RNA 2',3'-cyclic phosphodiesterase -
  dmul_RS04880 (Dmul_10250) - 1151896..1153062 (-) 1167 WP_020876957.1 homocysteine biosynthesis protein -
  dmul_RS04885 (Dmul_10260) - 1153106..1154461 (-) 1356 WP_020876958.1 M23 family metallopeptidase -
  dmul_RS04890 (Dmul_10270) kdsA 1154610..1155425 (+) 816 WP_020876959.1 3-deoxy-8-phosphooctulonate synthase -
  dmul_RS04895 (Dmul_10280) - 1155422..1155988 (+) 567 WP_020876960.1 KdsC family phosphatase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37284.89 Da        Isoelectric Point: 6.5164

>NTDB_id=179065 dmul_RS04870 WP_020876955.1 1150048..1151085(-) (recA) [Desulfococcus multivorans strain DSM 2059]
MNISPDKQKAVESAITQIERQFGKGSIMKLGSKEVQNIPVIPSGSLALDKALGIGGFPRGRVIEIFGPESSGKTTLALHA
VAEAQKQGGIAAFIDAEHALDTVYARKLGVNCDELLISQPDTGEQALEIADMLVRSGAVDIVVIDSVAALVPRAEIEGEM
GDAHMGLQARLMSQALRKLTGTIGKTMTSVIFINQIRMKIGVMFGNPETTTGGNALKFYASLRLDIRRMGAIKDGQEQIG
NRTKVRVVKNKMAPPFREAEFDITYGEGISRTGDLIDMGVEMGIVEKSGSWYSHDGDRIGQGRENVKKFLAENPEVYDAI
LKKVRVGLGLVKEDQPQPPPQKDAE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=179065 dmul_RS04870 WP_020876955.1 1150048..1151085(-) (recA) [Desulfococcus multivorans strain DSM 2059]
ATGAATATTTCACCCGATAAACAAAAAGCGGTGGAGTCCGCTATAACCCAGATCGAACGCCAGTTCGGCAAGGGCTCGAT
CATGAAACTGGGGAGCAAAGAGGTTCAGAATATCCCCGTCATTCCCTCCGGCTCGCTTGCCCTGGACAAGGCTCTGGGCA
TCGGCGGTTTTCCCAGGGGAAGAGTCATCGAGATTTTCGGTCCGGAATCCTCGGGGAAGACAACGCTGGCCCTTCATGCC
GTAGCCGAAGCTCAGAAACAGGGAGGCATCGCCGCCTTTATCGATGCCGAGCACGCTCTGGACACGGTCTACGCCCGAAA
GCTCGGGGTCAATTGCGACGAACTGCTGATATCCCAGCCCGACACCGGCGAACAGGCTCTGGAAATTGCAGATATGCTGG
TCCGCAGCGGCGCGGTGGACATCGTGGTGATCGACTCGGTAGCCGCCCTGGTTCCCCGCGCGGAAATCGAGGGAGAGATG
GGGGACGCCCATATGGGGCTCCAGGCCCGACTGATGTCCCAGGCCCTCAGAAAATTGACCGGCACCATCGGCAAGACGAT
GACATCGGTGATTTTCATCAACCAGATCCGGATGAAAATCGGCGTGATGTTCGGCAATCCCGAAACCACAACCGGCGGCA
ACGCCTTGAAATTCTATGCGTCCCTTCGCCTCGACATCCGGCGGATGGGTGCCATCAAAGACGGGCAGGAACAAATCGGC
AACCGAACCAAGGTACGGGTGGTCAAAAACAAGATGGCACCGCCCTTTCGGGAGGCTGAATTCGACATTACTTATGGAGA
AGGCATTTCGCGTACGGGCGACCTGATCGACATGGGCGTTGAGATGGGAATCGTCGAGAAAAGCGGCTCTTGGTATTCCC
ATGACGGCGATCGCATCGGCCAGGGTCGTGAAAACGTCAAGAAGTTTTTGGCCGAAAACCCCGAGGTCTACGACGCCATC
CTCAAAAAGGTCCGGGTCGGTTTGGGGCTGGTCAAGGAAGACCAACCGCAACCGCCTCCCCAGAAAGATGCGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7V2K4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.163

90.725

0.664
  recA Bacillus subtilis subsp. subtilis str. 168

69.538

94.203

0.655
  recA Neisseria gonorrhoeae MS11

69.444

93.913

0.652
  recA Neisseria gonorrhoeae MS11

69.444

93.913

0.652
  recA Neisseria gonorrhoeae strain FA1090

69.444

93.913

0.652
  recA Latilactobacillus sakei subsp. sakei 23K

64.793

97.971

0.635
  recA Glaesserella parasuis strain SC1401

68.012

93.333

0.635
  recA Pseudomonas stutzeri DSM 10701

64.201

97.971

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.188

92.754

0.623
  recA Vibrio cholerae strain A1552

67.188

92.754

0.623
  recA Acinetobacter baylyi ADP1

63.235

98.551

0.623
  recA Acinetobacter baumannii D1279779

62.941

98.551

0.62
  recA Streptococcus mutans UA159

63.69

97.391

0.62
  recA Helicobacter pylori strain NCTC11637

62.242

98.261

0.612
  recA Helicobacter pylori 26695

61.947

98.261

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

94.493

0.609
  recA Streptococcus pneumoniae Rx1

63.636

95.652

0.609
  recA Streptococcus pneumoniae D39

63.636

95.652

0.609
  recA Streptococcus pneumoniae R6

63.636

95.652

0.609
  recA Streptococcus pneumoniae TIGR4

63.636

95.652

0.609
  recA Streptococcus mitis SK321

63.636

95.652

0.609
  recA Streptococcus mitis NCTC 12261

63.636

95.652

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

94.493

0.606
  recA Streptococcus pyogenes NZ131

62.805

95.072

0.597
  recA Lactococcus lactis subsp. cremoris KW2

60.778

96.812

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.182

95.362

0.574

Multiple sequence alignment