Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MCBMB27_RS08725 Genome accession   NZ_CP015367
Coordinates   1969972..1971033 (-) Length   353 a.a.
NCBI ID   WP_391526775.1    Uniprot ID   -
Organism   Methylobacterium phyllosphaerae strain CBMB27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1964972..1976033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCBMB27_RS08680 (MCBMB27_01829) rplD 1965355..1965975 (+) 621 WP_043351248.1 50S ribosomal protein L4 -
  MCBMB27_RS08685 (MCBMB27_01830) - 1965972..1966268 (+) 297 WP_012319188.1 50S ribosomal protein L23 -
  MCBMB27_RS08690 (MCBMB27_01831) rplB 1966294..1967130 (+) 837 WP_020094256.1 50S ribosomal protein L2 -
  MCBMB27_RS08695 (MCBMB27_01832) rpsS 1967136..1967414 (+) 279 WP_012319190.1 30S ribosomal protein S19 -
  MCBMB27_RS08700 (MCBMB27_01833) rplV 1967416..1967802 (+) 387 WP_012319191.1 50S ribosomal protein L22 -
  MCBMB27_RS08705 (MCBMB27_01834) rpsC 1967813..1968559 (+) 747 WP_012319192.1 30S ribosomal protein S3 -
  MCBMB27_RS08710 (MCBMB27_01835) rplP 1968571..1968984 (+) 414 WP_043384884.1 50S ribosomal protein L16 -
  MCBMB27_RS08715 (MCBMB27_01836) rpmC 1968997..1969212 (+) 216 WP_043346669.1 50S ribosomal protein L29 -
  MCBMB27_RS08720 (MCBMB27_01837) rpsQ 1969235..1969498 (+) 264 WP_043346666.1 30S ribosomal protein S17 -
  MCBMB27_RS08725 (MCBMB27_01838) recA 1969972..1971033 (-) 1062 WP_391526775.1 recombinase RecA Machinery gene
  MCBMB27_RS08730 (MCBMB27_01839) cckA 1971360..1974122 (-) 2763 WP_075381903.1 cell cycle histidine kinase CckA -
  MCBMB27_RS08735 (MCBMB27_01840) flhB 1974285..1975352 (-) 1068 WP_043384892.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37791.20 Da        Isoelectric Point: 5.3529

>NTDB_id=178852 MCBMB27_RS08725 WP_391526775.1 1969972..1971033(-) (recA) [Methylobacterium phyllosphaerae strain CBMB27]
MPPVDKDKSKAIDAALAQIERAFGKGSIMRLGKNDKVQEVETVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLAL
HTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEG
EMGESQPGLQARLMSQALRKLTGSISRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRISTLKDRDEA
IGNQVRVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKGFLRDNPKIAA
EIEGSIRQNSGLVAEKILENATPTADDLDEGEA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=178852 MCBMB27_RS08725 WP_391526775.1 1969972..1971033(-) (recA) [Methylobacterium phyllosphaerae strain CBMB27]
ATGCCCCCCGTGGACAAGGACAAGTCCAAGGCCATTGACGCCGCCCTGGCTCAGATCGAGCGCGCCTTCGGCAAGGGCTC
GATCATGCGGCTCGGCAAGAACGACAAGGTTCAGGAGGTCGAGACCGTCTCGACCGGATCGCTGGGCCTCGACATCGCCC
TCGGCGTCGGCGGCCTCCCGCGCGGCCGGGTGATCGAGATCTACGGCCCCGAATCGTCCGGCAAGACGACGCTGGCGCTC
CACACCATCGCGGAGGCCCAGAAGAAGGGCGGCGTCTGCGCCTTCGTGGATGCCGAGCACGCCCTCGATCCGGTCTATGC
CCGCAAGCTCGGCGTCAACCTCGACGACCTGCTGATCTCGCAGCCCGATACGGGCGAGCAGGCCCTGGAGATCACCGACA
CGCTGGTGCGCTCCGGCGCCATCGACGTGCTGGTGGTCGACTCGGTGGCCGCGCTGACCCCGCGCGCCGAGATCGAGGGC
GAGATGGGCGAGAGCCAGCCGGGCCTTCAGGCCCGTTTGATGAGCCAGGCCCTGCGCAAGTTGACCGGCTCGATCTCACG
CTCGAACTGCATGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTACGGCAGCCCCGAGACCACCACGG
GCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGCATCTCGACCCTGAAGGATCGCGACGAGGCG
ATCGGCAACCAGGTCCGCGTCAAGGTGGTGAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTT
CGGCGAGGGCGTGTCGAAGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAGTCAGGCGCCTGGT
TCTCGTATAACAGCCAGCGCCTCGGCCAGGGCCGCGAGAACGCGAAGGGCTTCCTGCGCGACAACCCGAAGATCGCCGCC
GAAATCGAGGGCTCCATCCGGCAGAATTCCGGCTTGGTCGCCGAGAAGATCCTGGAAAACGCGACCCCGACCGCCGACGA
TCTCGACGAGGGCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.762

98.867

0.66
  recA Pseudomonas stutzeri DSM 10701

66.189

98.867

0.654
  recA Vibrio cholerae strain A1552

64.972

100

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.972

100

0.652
  recA Ralstonia pseudosolanacearum GMI1000

71.975

88.952

0.64
  recA Acinetobacter baumannii D1279779

69.538

92.068

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.182

93.484

0.637
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.351

0.635
  recA Glaesserella parasuis strain SC1401

65.882

96.317

0.635
  recA Helicobacter pylori strain NCTC11637

66.261

93.201

0.618
  recA Helicobacter pylori 26695

66.261

93.201

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

92.351

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.22

92.635

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

61.29

96.601

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.665

91.218

0.581
  recA Streptococcus mitis NCTC 12261

58.046

98.584

0.572
  recA Streptococcus pneumoniae TIGR4

57.225

98.017

0.561
  recA Streptococcus pneumoniae Rx1

57.225

98.017

0.561
  recA Streptococcus pneumoniae D39

57.225

98.017

0.561
  recA Streptococcus pneumoniae R6

57.225

98.017

0.561
  recA Streptococcus mitis SK321

59.517

93.768

0.558
  recA Streptococcus pyogenes NZ131

59.271

93.201

0.552
  recA Streptococcus mutans UA159

58.559

94.334

0.552
  recA Lactococcus lactis subsp. cremoris KW2

58.61

93.768

0.55

Multiple sequence alignment