Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IEC338SC_RS12795 Genome accession   NZ_CP015145
Coordinates   2712814..2713860 (+) Length   348 a.a.
NCBI ID   WP_063098994.1    Uniprot ID   -
Organism   Acinetobacter pittii strain IEC338SC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2707814..2718860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS12765 (IEC338SC_2568) kynU 2708403..2709653 (-) 1251 WP_063098992.1 kynureninase -
  IEC338SC_RS12770 (IEC338SC_2569) gigD 2709801..2710250 (+) 450 WP_004791887.1 Lrp/AsnC family transcriptional regulator GigD -
  IEC338SC_RS12775 (IEC338SC_2570) - 2710279..2710815 (+) 537 WP_032006906.1 GNAT family N-acetyltransferase -
  IEC338SC_RS12780 (IEC338SC_2571) - 2710853..2711146 (-) 294 WP_025465974.1 hypothetical protein -
  IEC338SC_RS12785 (IEC338SC_2572) yrfG 2711570..2712256 (+) 687 WP_063098993.1 HAD-IA family hydrolase -
  IEC338SC_RS12790 (IEC338SC_2573) hslR 2712240..2712668 (+) 429 WP_005068915.1 RNA-binding S4 domain-containing protein -
  IEC338SC_RS12795 (IEC338SC_2574) recA 2712814..2713860 (+) 1047 WP_063098994.1 recombinase RecA Machinery gene
  IEC338SC_RS12800 (IEC338SC_2575) recX 2713920..2714402 (+) 483 WP_005068912.1 regulatory protein RecX -
  IEC338SC_RS12810 (IEC338SC_2576) - 2714827..2715702 (+) 876 WP_014206981.1 YbgF trimerization domain-containing protein -
  IEC338SC_RS12815 (IEC338SC_2577) lpxA 2715760..2716548 (-) 789 WP_063098995.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  IEC338SC_RS12820 (IEC338SC_2578) fabZ 2716545..2717030 (-) 486 WP_002115603.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IEC338SC_RS12825 (IEC338SC_2579) lpxD 2717037..2718107 (-) 1071 WP_014206984.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IEC338SC_RS12830 (IEC338SC_2580) ompH 2718112..2718612 (-) 501 WP_014206985.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37739.14 Da        Isoelectric Point: 4.9279

>NTDB_id=177113 IEC338SC_RS12795 WP_063098994.1 2712814..2713860(+) (recA) [Acinetobacter pittii strain IEC338SC]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QYQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
IIREQLLTTGTNGAVQVEDEEEDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=177113 IEC338SC_RS12795 WP_063098994.1 2712814..2713860(+) (recA) [Acinetobacter pittii strain IEC338SC]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAGCAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGATAACACTGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTCCAAGCGATTGCA
CAATATCAAAAAGCTGGTGGTACTTGTGCATTTATCGATGCAGAACACGCATTAGATCCACAATATGCACGTAAGCTGGG
CGTGGACATTGATAATCTACTTGTATCGCAACCTGATAACGGTGAACAAGCACTTGAGATTGCAGACATGCTAGTTCGTT
CTGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCTGCTCTTACTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGCTTACAAGCTCGCTTAATGAGTCAGGCATTACGTAAAATTACGGGTAACGCTAAACGCTCGAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAGACTACGACTGGTGGTAACGCAT
TGAAGTTCTATGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAGGTCAAAGAAGGTGATGAAATCATCGGCTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCTTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
AAACCAGCTTGGCGAACTTGTAGATTTAGCTGTACAACAAGATATCGTGCAAAAAGCAGGCGCTTGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTTATCCGCCACTTTGAAGAAAATCCTCAAATGGCTGGAGAAATTGAAAAG
ATTATCCGTGAACAACTGCTAACTACGGGTACTAATGGTGCTGTACAAGTGGAAGATGAAGAAGAAGATCTTCTATTAGA
GTCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.275

100

0.966
  recA Acinetobacter baylyi ADP1

92.55

100

0.928
  recA Pseudomonas stutzeri DSM 10701

75.602

95.402

0.721
  recA Vibrio cholerae strain A1552

74.006

93.966

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695
  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae strain FA1090

65.805

100

0.658
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.563

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609
  recA Helicobacter pylori strain NCTC11637

63.609

93.966

0.598
  recA Helicobacter pylori 26695

63.303

93.966

0.595
  recA Streptococcus mitis SK321

59.531

97.989

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.092

0.583
  recA Streptococcus mitis NCTC 12261

57.183

100

0.583
  recA Streptococcus mutans UA159

61.89

94.253

0.583
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Streptococcus pneumoniae D39

61.043

93.678

0.572
  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572
  recA Streptococcus pneumoniae R6

61.043

93.678

0.572
  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.241

0.546

Multiple sequence alignment