Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A4U42_RS03870 Genome accession   NZ_CP015137
Coordinates   922408..923484 (-) Length   358 a.a.
NCBI ID   WP_022634556.1    Uniprot ID   A0AAP1XKA4
Organism   Dickeya solani IPO 2222     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 917408..928484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U42_RS03855 (A4U42_03860) csrA 918604..918789 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  A4U42_RS03860 (A4U42_03865) alaS 919111..921738 (-) 2628 WP_022634554.1 alanine--tRNA ligase -
  A4U42_RS03865 (A4U42_03870) recX 921876..922364 (-) 489 WP_022634555.1 recombination regulator RecX -
  A4U42_RS03870 (A4U42_03875) recA 922408..923484 (-) 1077 WP_022634556.1 recombinase RecA Machinery gene
  A4U42_RS03875 (A4U42_03880) pncC 923594..924082 (-) 489 WP_022634557.1 nicotinamide-nucleotide amidase -
  A4U42_RS22210 - 924367..924618 (+) 252 WP_146053348.1 hypothetical protein -
  A4U42_RS03880 (A4U42_03885) - 926133..926645 (+) 513 WP_023637959.1 SRPBCC family protein -
  A4U42_RS03885 (A4U42_03890) cybB 926729..927262 (-) 534 WP_022634560.1 cytochrome b561 -
  A4U42_RS03890 (A4U42_03895) - 927670..928299 (-) 630 WP_022634561.1 LysE family translocator -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38421.97 Da        Isoelectric Point: 4.8875

>NTDB_id=177038 A4U42_RS03870 WP_022634556.1 922408..923484(-) (recA) [Dickeya solani IPO 2222]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKYKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTISVEL
DKKLREMLLHKDNEAVPGVSGKSAEYDEEAAGELNDDF

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=177038 A4U42_RS03870 WP_022634556.1 922408..923484(-) (recA) [Dickeya solani IPO 2222]
ATGGCTATTGATGAGAACAAACAAAAGGCACTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGTTCTAT
CATGCGTTTGGGCGAAGATCGCTCAATGGATGTTGAAACGATCTCCACGGGCTCCCTGTCGCTCGATATCGCTCTGGGTG
TCGGTGGTTTGCCGATGGGGCGTATTGTCGAAATCTACGGTCCGGAATCCTCTGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCGGCCGCGCAGCGTGGAGGCAAAACCTGTGCGTTCATCGATGCTGAGCACGCGCTGGACCCAGTCTACGCAAAGAA
ACTGGGTGTTGATATCGACAATCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAGGCGTTGGAAATCTGTGATGCGTTGG
CTCGCTCCGGCGCAGTGGATGTAATTATCGTTGACTCCGTAGCGGCGTTGACGCCGAAAGCGGAGATCGAAGGGGAAATC
GGCGATTCGCATATGGGACTGGCAGCGCGCATGATGAGCCAGGCTATGCGCAAACTGGCCGGTAACCTGAAACAATCCAA
TACGCTGCTGATCTTTATCAACCAGATTCGTATGAAGATTGGCGTCATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCGCTGAAGTTCTATGCTTCCGTCCGTCTAGATATCCGCCGCATCGGCTCGATTAAGGAAGGCGAAGAAGTCGTCGGG
AGCGAAACTCGCGTCAAAGTCGTGAAGAACAAGGTTGCCGCACCGTTCAAACAGGCCGAATTCCAGATTCTGTATGGCGA
AGGGATCAATACCTACGGTGAGCTGGTTGATCTGGGCGTGAAGTACAAACTGATTGAGAAAGCCGGTGCCTGGTACAGTT
ACAATGGCGATAAAATTGGGCAGGGCAAGGCTAACGCCTGCAATTTCCTGAAGGAAAATCCGACTATCTCCGTCGAACTC
GACAAGAAACTGCGCGAAATGTTGCTGCACAAAGATAATGAAGCCGTGCCGGGTGTTAGCGGTAAAAGCGCTGAGTACGA
TGAAGAAGCCGCTGGCGAACTCAACGACGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.899

99.441

0.804
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.899

99.441

0.804
  recA Acinetobacter baylyi ADP1

71.098

96.648

0.687
  recA Pseudomonas stutzeri DSM 10701

75.229

91.341

0.687
  recA Acinetobacter baumannii D1279779

73.394

91.341

0.67
  recA Glaesserella parasuis strain SC1401

69.912

94.693

0.662
  recA Neisseria gonorrhoeae MS11

70.552

91.061

0.642
  recA Neisseria gonorrhoeae MS11

70.552

91.061

0.642
  recA Neisseria gonorrhoeae strain FA1090

70.552

91.061

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

86.872

0.617
  recA Streptococcus mutans UA159

59.659

98.324

0.587
  recA Streptococcus pneumoniae TIGR4

61.677

93.296

0.575
  recA Streptococcus pneumoniae Rx1

61.677

93.296

0.575
  recA Streptococcus pneumoniae D39

61.677

93.296

0.575
  recA Streptococcus pneumoniae R6

61.677

93.296

0.575
  recA Helicobacter pylori 26695

62.385

91.341

0.57
  recA Helicobacter pylori strain NCTC11637

62.08

91.341

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.341

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

89.665

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

93.575

0.561
  recA Streptococcus mitis NCTC 12261

62.229

90.223

0.561
  recA Streptococcus mitis SK321

61.92

90.223

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

90.782

0.559
  recA Streptococcus pyogenes NZ131

61.231

90.782

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.223

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

91.061

0.542

Multiple sequence alignment