Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A3217_RS02550 Genome accession   NZ_CP014991
Coordinates   529304..530344 (-) Length   346 a.a.
NCBI ID   WP_066387559.1    Uniprot ID   -
Organism   Helicobacter himalayensis strain YS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524304..535344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3217_RS02525 creD 524313..525536 (+) 1224 WP_066387548.1 cell envelope integrity protein CreD -
  A3217_RS02530 - 525555..527027 (+) 1473 WP_066387551.1 replicative DNA helicase -
  A3217_RS02535 - 527064..527711 (-) 648 WP_066387554.1 AMIN domain-containing protein -
  A3217_RS02540 - 527744..527995 (-) 252 WP_066387557.1 hypothetical protein -
  A3217_RS02545 eno 528005..529282 (-) 1278 WP_066387558.1 phosphopyruvate hydratase -
  A3217_RS02550 recA 529304..530344 (-) 1041 WP_066387559.1 recombinase RecA Machinery gene
  A3217_RS02555 - 530640..530921 (+) 282 WP_066387564.1 HU family DNA-binding protein -
  A3217_RS02560 - 531099..531800 (-) 702 WP_231860267.1 RsmE family RNA methyltransferase -
  A3217_RS02565 - 531809..532270 (-) 462 WP_231860268.1 hypothetical protein -
  A3217_RS02570 hemH 532365..533324 (+) 960 WP_082807853.1 ferrochelatase -
  A3217_RS02575 - 533403..534041 (+) 639 WP_066387574.1 thioredoxin fold domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37725.36 Da        Isoelectric Point: 5.5442

>NTDB_id=175816 A3217_RS02550 WP_066387559.1 529304..530344(-) (recA) [Helicobacter himalayensis strain YS1]
MAIDERRQKAIDLALKQIDKAFGKGALVRLGDKQVEKIDAISTGSLGLDMALGIGGVPKGRIIEIYGPESSGKTTLSLQI
VAECQKNGGIAAFIDAEHALDVYYAKNLGVDTENLLVSQPDNGEQALEILETLTRSGAVDLIVIDSVAALTPRAEIEGDM
GDQHVGLQARLMSHALRKITGILHKMNATLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNDQNI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGIKLDIVDKSGAWLSYKDVKLGQGRENAKIFLRENQNIAQE
ITAKIKEQIGTKDEILPLPDEPQDEM

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=175816 A3217_RS02550 WP_066387559.1 529304..530344(-) (recA) [Helicobacter himalayensis strain YS1]
ATGGCAATAGATGAAAGGCGGCAGAAGGCTATTGACCTTGCGCTCAAGCAAATTGATAAGGCTTTTGGCAAGGGTGCGCT
TGTGCGCTTGGGCGACAAGCAGGTAGAAAAAATCGATGCAATCTCCACAGGCTCGCTCGGGCTTGATATGGCGCTAGGCA
TTGGTGGTGTGCCAAAGGGGCGCATTATTGAAATTTATGGACCAGAATCTAGCGGTAAAACCACGCTTTCTTTGCAGATT
GTCGCAGAATGCCAAAAAAATGGTGGCATTGCGGCATTTATCGATGCAGAGCACGCGCTAGATGTGTATTACGCAAAAAA
TCTTGGTGTGGATACAGAAAATCTCCTCGTCTCTCAGCCAGACAATGGCGAGCAAGCACTTGAAATCCTAGAAACGCTCA
CAAGAAGCGGTGCAGTGGATTTAATCGTGATAGATTCCGTAGCTGCGCTCACGCCACGCGCGGAAATTGAAGGTGATATG
GGGGATCAGCATGTGGGCTTGCAGGCACGCCTTATGAGCCATGCGTTGCGTAAGATTACAGGGATTTTGCATAAAATGAA
CGCCACGCTAATTTTTATCAACCAAATCCGTATGAAAATCGGCACTATGGGCTATGGCAGTCCAGAAACCACCACAGGTG
GAAATGCGCTGAAGTTTTATGCAAGTGTGCGCATTGATATTCGTCGCATAGCAACTTTGAAGCAAAACGACCAAAATATC
GGCAATCGTGCCAAAGCAAAAGTCGTCAAAAACAAGGTCGCACCACCATTTAGAGAAGCGGAGTTTGATATTATGTTTGG
GGAAGGTATAAGCAAAGAGGGTGAAATCATCGATTATGGAATCAAACTTGATATTGTTGATAAAAGTGGTGCGTGGCTTT
CTTATAAAGATGTTAAATTGGGGCAAGGTAGGGAAAATGCGAAAATTTTCTTGCGCGAAAATCAAAATATCGCACAAGAA
ATCACAGCAAAAATAAAAGAGCAAATCGGCACAAAAGATGAGATTCTGCCACTGCCTGATGAGCCACAAGATGAAATGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

86.994

100

0.87
  recA Helicobacter pylori 26695

86.705

100

0.867
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.219

99.133

0.746
  recA Acinetobacter baumannii D1279779

65.046

95.087

0.619
  recA Acinetobacter baylyi ADP1

64.848

95.376

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

65.741

93.642

0.616
  recA Ralstonia pseudosolanacearum GMI1000

66.561

90.751

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

96.821

0.604
  recA Pseudomonas stutzeri DSM 10701

63.303

94.509

0.598
  recA Neisseria gonorrhoeae strain FA1090

65.595

89.884

0.59
  recA Neisseria gonorrhoeae MS11

65.595

89.884

0.59
  recA Neisseria gonorrhoeae MS11

65.595

89.884

0.59
  recA Streptococcus mitis NCTC 12261

60.423

95.665

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.162

94.509

0.578
  recA Vibrio cholerae strain A1552

61.162

94.509

0.578
  recA Glaesserella parasuis strain SC1401

61.162

94.509

0.578
  recA Streptococcus mitis SK321

60.121

95.665

0.575
  recA Streptococcus pneumoniae TIGR4

59.819

95.665

0.572
  recA Streptococcus pneumoniae Rx1

59.819

95.665

0.572
  recA Streptococcus pneumoniae D39

59.819

95.665

0.572
  recA Streptococcus pneumoniae R6

59.819

95.665

0.572
  recA Streptococcus pyogenes NZ131

59.819

95.665

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

57.391

99.711

0.572
  recA Streptococcus mutans UA159

58.982

96.532

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.434

95.954

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.716

93.642

0.54

Multiple sequence alignment