Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AYR56_RS05515 Genome accession   NZ_CP014899
Coordinates   1230461..1231630 (+) Length   389 a.a.
NCBI ID   WP_068225330.1    Uniprot ID   -
Organism   Loigolactobacillus backii strain TMW 1.2002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1225461..1236630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR56_RS05495 (AYR56_05505) ymfI 1226205..1226933 (+) 729 WP_068225334.1 elongation factor P 5-aminopentanone reductase -
  AYR56_RS05500 (AYR56_05510) - 1227019..1228023 (+) 1005 WP_068225333.1 helix-turn-helix domain-containing protein -
  AYR56_RS05505 (AYR56_05515) pgsA 1228192..1228779 (+) 588 WP_068225332.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AYR56_RS05510 (AYR56_05520) cinA 1229109..1230356 (+) 1248 WP_068225331.1 competence/damage-inducible protein A Machinery gene
  AYR56_RS05515 (AYR56_05525) recA 1230461..1231630 (+) 1170 WP_068225330.1 recombinase RecA Machinery gene
  AYR56_RS05520 (AYR56_05530) rny 1231930..1233492 (+) 1563 WP_068225329.1 ribonuclease Y -
  AYR56_RS05525 (AYR56_05535) - 1233894..1234967 (+) 1074 WP_068225328.1 glycosyltransferase family 4 protein -
  AYR56_RS05530 (AYR56_05540) - 1235073..1235711 (-) 639 WP_068225327.1 YigZ family protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 41585.28 Da        Isoelectric Point: 6.9000

>NTDB_id=175052 AYR56_RS05515 WP_068225330.1 1230461..1231630(+) (recA) [Loigolactobacillus backii strain TMW 1.2002]
MADERKAALDAALKKIEKNFGKGSIMRLGEKADTQISTIPSGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENAMDPKYAANLGVNIDDLLLSQPDTGEQGLEIADALVSSGAIDLVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKNGTDIIGNR
VKIKVVKNKVAPPFKVALVDIMYGEGISQTGELVDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKHYLSDHPEVMAEIKQ
KVREAYGIAEASETPTETKADAKATKATKAKNKVESSANAKSEAKTDASVKAKINAKTSDTKDPSQLDI

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=175052 AYR56_RS05515 WP_068225330.1 1230461..1231630(+) (recA) [Loigolactobacillus backii strain TMW 1.2002]
TTGGCTGATGAACGTAAGGCGGCTTTAGATGCTGCATTAAAAAAAATCGAAAAGAATTTTGGTAAGGGTTCAATTATGCG
TTTAGGGGAAAAGGCGGATACGCAGATCTCGACAATTCCGTCTGGTTCACTGGCATTGGATGAAGCTTTAGGTGTTGGTG
GTTATCCACGGGGCAGAATTGTTGAGGTTTACGGCCCTGAAAGTTCAGGTAAGACAACCGTAGCGTTACACGCAGTTGCT
GAAGTTCAGAAACGTGGGGGAACTGCGGCGTACATTGATGCTGAAAATGCAATGGATCCTAAGTATGCTGCAAATTTAGG
GGTTAATATTGATGATCTATTACTTTCCCAACCGGATACCGGTGAACAAGGTTTAGAGATTGCGGACGCACTGGTTTCCA
GTGGTGCGATTGATCTTGTTGTAGTGGATTCTGTAGCCGCCTTAGTACCACGAGCTGAAATTGAGGGTGAGATGGGCGAT
GCGCACGTGGGCTTGCAAGCACGTCTAATGTCGCAAGCACTGCGTAAGCTTTCGGGCACAATTAATAAGACAAAAACGAT
TGCCATTTTTATTAATCAGATTCGGGAAAAAGTTGGTATTATGTTTGGTAATCCCGAAACAACTCCTGGTGGCCGTGCTT
TGAAGTTTTATTCGACCATTCGGCTGGAAGTTCGACGGGCGGAGCAAATTAAGAATGGTACTGACATAATCGGTAATCGA
GTTAAGATTAAGGTTGTTAAAAACAAGGTTGCACCACCATTTAAGGTTGCGCTAGTCGACATTATGTATGGTGAAGGTAT
TTCCCAAACTGGTGAATTAGTTGATATGGCGGTTGAAAAAGATATTGTCGATAAAAGTGGATCTTGGTACTCTTATGGTG
AGGATCGAATTGGTCAAGGACGTGAAAATGCTAAGCATTATTTAAGCGATCATCCCGAAGTTATGGCCGAAATCAAGCAA
AAAGTTCGTGAAGCTTACGGAATTGCTGAAGCAAGTGAGACACCTACGGAAACAAAGGCGGATGCTAAAGCAACAAAAGC
AACAAAAGCAAAAAATAAGGTAGAATCAAGTGCTAATGCAAAGTCGGAGGCCAAAACAGATGCAAGTGTTAAGGCCAAAA
TAAATGCAAAAACGTCAGATACAAAAGATCCTAGTCAATTAGATATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

85.841

87.147

0.748
  recA Bacillus subtilis subsp. subtilis str. 168

76.829

84.319

0.648
  recA Streptococcus mutans UA159

67.967

92.288

0.627
  recA Streptococcus pneumoniae Rx1

68.986

88.689

0.612
  recA Streptococcus pneumoniae D39

68.986

88.689

0.612
  recA Streptococcus pneumoniae R6

68.986

88.689

0.612
  recA Streptococcus pneumoniae TIGR4

68.986

88.689

0.612
  recA Streptococcus mitis SK321

69.298

87.918

0.609
  recA Streptococcus mitis NCTC 12261

68.406

88.689

0.607
  recA Streptococcus pyogenes NZ131

70.695

85.09

0.602
  recA Lactococcus lactis subsp. cremoris KW2

68.955

86.118

0.594
  recA Neisseria gonorrhoeae MS11

59.593

88.432

0.527
  recA Neisseria gonorrhoeae MS11

59.593

88.432

0.527
  recA Neisseria gonorrhoeae strain FA1090

59.593

88.432

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.398

84.576

0.519
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

84.319

0.512
  recA Vibrio cholerae strain A1552

58.187

87.918

0.512
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.187

87.918

0.512
  recA Ralstonia pseudosolanacearum GMI1000

63.578

80.463

0.512
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

83.548

0.509
  recA Acinetobacter baylyi ADP1

61.111

83.29

0.509
  recA Pseudomonas stutzeri DSM 10701

57.185

87.661

0.501
  recA Acinetobacter baumannii D1279779

60.185

83.29

0.501
  recA Glaesserella parasuis strain SC1401

59.813

82.519

0.494
  recA Helicobacter pylori 26695

58.589

83.805

0.491
  recA Helicobacter pylori strain NCTC11637

58.589

83.805

0.491

Multiple sequence alignment