Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | BS103_RS14615 | Genome accession | NZ_CP018332 |
| Coordinates | 3045693..3046208 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain A1296 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3040693..3051208
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS103_RS14600 (BS103_14570) | - | 3041040..3042500 (+) | 1461 | WP_000004974.1 | amino acid permease | - |
| BS103_RS14605 (BS103_14575) | - | 3042776..3043981 (+) | 1206 | WP_000512701.1 | RtcB family protein | - |
| BS103_RS18570 (BS103_14580) | - | 3044000..3044143 (+) | 144 | WP_162541494.1 | hypothetical protein | - |
| BS103_RS14610 (BS103_14585) | omp38 | 3044268..3045311 (-) | 1044 | WP_000777884.1 | outer membrane protein Omp38 | - |
| BS103_RS14615 (BS103_14590) | fimT | 3045693..3046208 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| BS103_RS14620 (BS103_14595) | - | 3046317..3047492 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| BS103_RS14625 (BS103_14600) | - | 3047620..3048063 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| BS103_RS14630 (BS103_14605) | - | 3048106..3048459 (-) | 354 | WP_000457783.1 | DMT family transporter | - |
| BS103_RS14635 (BS103_14610) | - | 3048542..3049027 (-) | 486 | WP_000935248.1 | DUF934 domain-containing protein | - |
| BS103_RS14640 (BS103_14615) | - | 3049020..3050663 (-) | 1644 | WP_097355400.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=175040 BS103_RS14615 WP_000477151.1 3045693..3046208(+) (fimT) [Acinetobacter baumannii strain A1296]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=175040 BS103_RS14615 WP_000477151.1 3045693..3046208(+) (fimT) [Acinetobacter baumannii strain A1296]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |