Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AYR55_RS11345 Genome accession   NZ_CP014890
Coordinates   2460355..2461437 (+) Length   360 a.a.
NCBI ID   WP_068226112.1    Uniprot ID   A0A192H018
Organism   Loigolactobacillus backii strain TMW 1.1992     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2455355..2466437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR55_RS11335 (AYR55_11340) - 2456300..2459008 (+) 2709 WP_068279644.1 HAD-IC family P-type ATPase -
  AYR55_RS11340 (AYR55_11345) pnuC 2459300..2460055 (+) 756 WP_068226111.1 nicotinamide riboside transporter PnuC -
  AYR55_RS11345 (AYR55_11350) recA 2460355..2461437 (+) 1083 WP_068226112.1 recombinase RecA Machinery gene
  AYR55_RS11350 (AYR55_11355) - 2461662..2462945 (+) 1284 WP_068224077.1 ISL3 family transposase -
  AYR55_RS11355 (AYR55_11360) - 2463274..2463525 (+) 252 WP_143452799.1 hypothetical protein -
  AYR55_RS11360 (AYR55_11365) - 2463765..2464019 (+) 255 WP_068226114.1 hypothetical protein -
  AYR55_RS11365 (AYR55_11370) - 2464131..2464388 (+) 258 WP_068226115.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  AYR55_RS11370 (AYR55_11375) amaP 2464402..2464947 (+) 546 WP_068226116.1 alkaline shock response membrane anchor protein AmaP -
  AYR55_RS11375 (AYR55_11380) - 2464963..2465142 (+) 180 WP_068226117.1 DUF2273 domain-containing protein -
  AYR55_RS11380 (AYR55_11385) - 2465165..2465575 (+) 411 WP_068279658.1 Asp23/Gls24 family envelope stress response protein -
  AYR55_RS11385 (AYR55_11390) - 2465602..2466030 (+) 429 WP_068226119.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38613.93 Da        Isoelectric Point: 7.3963

>NTDB_id=175040 AYR55_RS11345 WP_068226112.1 2460355..2461437(+) (recA) [Loigolactobacillus backii strain TMW 1.1992]
MATKSIANHDGTTAKNETERQAALDHALKKIRQSFGQGAVMRMGENTSTRIETNSTGILSLDVALGVGGFPKGRIIEIYG
PESSGKTTLALAATASVQRNGGTVAYIDAENAMDPKYAQQLGVNIDQLLLSQPDSGEEGLAIADTLVASSAIDLVVVDSV
AALTPQAEINGEMGDAHVGLQARMMSQALRKLSGEINRTKTTVIFINQLREKIGVMFGNPETTPGGRALKFYATIRLDVR
RGEKIKNGTEIIGNQIKIKVAKNKVAAPFKVAEIQNYYGKGFSAVGDVLGLAVENDIAKKSGAWYSYKGERIGQGLPNST
AYLTDHPDLLDEMSKEVRVKLLPEVDEKAADKPKQKTPEE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=175040 AYR55_RS11345 WP_068226112.1 2460355..2461437(+) (recA) [Loigolactobacillus backii strain TMW 1.1992]
ATGGCAACAAAGAGTATTGCTAATCATGATGGCACGACTGCCAAGAACGAAACAGAACGACAGGCTGCATTAGACCACGC
CTTAAAGAAGATTCGTCAAAGCTTTGGGCAAGGCGCTGTAATGCGCATGGGTGAGAATACAAGTACCCGGATCGAAACAA
ACTCGACTGGTATTTTATCATTAGATGTTGCTTTGGGTGTTGGTGGATTTCCTAAAGGGCGGATTATTGAAATCTACGGT
CCTGAATCAAGTGGGAAGACAACGCTAGCCTTAGCGGCAACTGCATCGGTTCAACGTAATGGGGGAACCGTCGCTTATAT
TGATGCCGAAAATGCAATGGACCCTAAGTACGCACAGCAATTAGGTGTTAACATTGATCAGTTGCTGTTATCACAACCAG
ACTCCGGTGAAGAAGGGTTAGCTATTGCTGATACACTGGTGGCAAGTAGCGCGATTGATCTAGTTGTTGTTGATTCGGTT
GCGGCATTAACACCCCAAGCTGAAATTAATGGCGAGATGGGTGACGCCCACGTTGGGTTACAAGCACGAATGATGTCCCA
GGCACTCCGTAAATTATCTGGTGAGATTAACCGAACAAAAACAACGGTTATTTTCATTAATCAATTACGGGAAAAGATTG
GGGTTATGTTCGGTAATCCTGAAACAACTCCTGGTGGTCGTGCGTTGAAGTTTTACGCAACCATTCGCTTGGACGTAAGA
CGTGGCGAGAAGATTAAGAACGGAACCGAAATAATTGGTAATCAAATTAAGATCAAGGTCGCTAAGAATAAAGTAGCGGC
GCCTTTTAAAGTTGCCGAAATTCAAAACTATTATGGCAAGGGTTTTTCCGCCGTTGGGGATGTGCTTGGACTAGCAGTTG
AAAATGATATCGCTAAGAAGTCAGGCGCTTGGTATAGTTATAAGGGCGAACGTATTGGGCAAGGCTTGCCTAATTCAACG
GCCTATTTAACTGATCATCCTGATTTATTAGATGAGATGTCAAAAGAAGTACGGGTAAAGTTATTACCGGAAGTGGACGA
AAAGGCTGCTGATAAGCCGAAACAGAAAACTCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A192H018

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

68.373

92.222

0.631
  recA Streptococcus pyogenes NZ131

62.682

95.278

0.597
  recA Streptococcus mutans UA159

58.127

100

0.586
  recA Lactococcus lactis subsp. cremoris KW2

61.404

95

0.583
  recA Streptococcus mitis SK321

59.04

98.333

0.581
  recA Streptococcus mitis NCTC 12261

61.31

93.333

0.572
  recA Streptococcus pneumoniae R6

62.691

90.833

0.569
  recA Streptococcus pneumoniae Rx1

62.691

90.833

0.569
  recA Streptococcus pneumoniae D39

62.691

90.833

0.569
  recA Streptococcus pneumoniae TIGR4

62.691

90.833

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.167

0.556
  recA Acinetobacter baylyi ADP1

57.771

94.722

0.547
  recA Vibrio cholerae O1 biovar El Tor strain E7946

55.874

96.944

0.542
  recA Vibrio cholerae strain A1552

55.874

96.944

0.542
  recA Acinetobacter baumannii D1279779

59.752

89.722

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

91.111

0.528
  recA Neisseria gonorrhoeae MS11

56.587

92.778

0.525
  recA Neisseria gonorrhoeae strain FA1090

56.587

92.778

0.525
  recA Neisseria gonorrhoeae MS11

56.587

92.778

0.525
  recA Pseudomonas stutzeri DSM 10701

58.514

89.722

0.525
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.655

93.333

0.519
  recA Ralstonia pseudosolanacearum GMI1000

58.842

86.389

0.508
  recA Glaesserella parasuis strain SC1401

56.347

89.722

0.506
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.25

88.889

0.5
  recA Helicobacter pylori 26695

54.18

89.722

0.486
  recA Helicobacter pylori strain NCTC11637

54.18

89.722

0.486

Multiple sequence alignment