Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A3224_RS10035 Genome accession   NZ_CP014864
Coordinates   2367908..2368945 (-) Length   345 a.a.
NCBI ID   WP_067154002.1    Uniprot ID   A0A143HMX8
Organism   Microbulbifer thermotolerans strain DAU221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362908..2373945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3224_RS10005 (A3224_10005) - 2363021..2363371 (-) 351 WP_067153984.1 histidine triad nucleotide-binding protein -
  A3224_RS10010 (A3224_10010) - 2363375..2363560 (-) 186 WP_067153987.1 Trm112 family protein -
  A3224_RS10015 (A3224_10015) - 2363851..2364690 (-) 840 WP_067153990.1 alpha/beta hydrolase -
  A3224_RS10020 (A3224_10020) - 2364726..2365742 (-) 1017 WP_067153993.1 class I fructose-bisphosphate aldolase -
  A3224_RS10025 (A3224_10025) glpK 2365779..2367257 (-) 1479 WP_067153996.1 glycerol kinase GlpK -
  A3224_RS10030 (A3224_10030) - 2367395..2367907 (-) 513 WP_067153999.1 regulatory protein RecX -
  A3224_RS10035 (A3224_10035) recA 2367908..2368945 (-) 1038 WP_067154002.1 recombinase RecA Machinery gene
  A3224_RS10040 (A3224_10040) - 2369134..2369649 (-) 516 WP_067157802.1 CinA family protein -
  A3224_RS10045 (A3224_10045) - 2369919..2370809 (+) 891 WP_197462969.1 SMP-30/gluconolactonase/LRE family protein -
  A3224_RS10050 (A3224_10050) - 2370895..2371809 (-) 915 WP_067154008.1 2-dehydro-3-deoxygalactonokinase -
  A3224_RS10055 (A3224_10055) - 2372129..2372737 (+) 609 WP_067154010.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37061.36 Da        Isoelectric Point: 4.9464

>NTDB_id=174822 A3224_RS10035 WP_067154002.1 2367908..2368945(-) (recA) [Microbulbifer thermotolerans strain DAU221]
MDSNKNKALQAALAQIERQFGKGTVMRMGDKGRERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRQGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGEGINLLGEIVDYGVKLGLVDKAGAWYSYKGEKIGQGKANAVKFLKENPDIRDEIEG
QLRAQMLGDLAPASPEEVVADTSDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=174822 A3224_RS10035 WP_067154002.1 2367908..2368945(-) (recA) [Microbulbifer thermotolerans strain DAU221]
ATGGATTCCAACAAAAACAAGGCGCTGCAGGCGGCTCTGGCGCAGATCGAGCGCCAGTTCGGCAAGGGCACAGTGATGCG
GATGGGCGACAAGGGGCGCGAACGCATCCCCGCGATTTCCACCGGCTCCTTGGGCCTGGATGTGGCACTGGGTATCGGCG
GTTTACCCCGTGGCCGTATCGTCGAGATCTATGGACCCGAGTCCTCTGGTAAGACCACCCTGACCCTGCAGGTGATCGCC
GAGGCTCAGCGCCAAGGGGGCACTTGTGCCTTCGTCGACGCCGAGCACGCGCTCGACCCCATATACGCGGAGAAGCTGGG
GGTCAATGTGGACGAGCTGATCGTGTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAGTGGCCGACATGCTGGTGCGCT
CCGGGGCGGTGGATGTGCTGGTGGTCGACTCTGTGGCGGCGCTGACGCCGCGTGCGGAGATCGAGGGTGAAATGGGAGAC
TCCCATGTAGGGCTGCAGGCGCGCCTGATGTCTCAGGCTCTGCGCAAGCTGACCGGCAACATCAAGAACACCAATACCCT
GTGCATTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTTCACCGGAGACCACTACCGGCGGTAACGCGC
TCAAATTCTATTCCTCCGTGCGTCTGGACATACGCCGTATCGGTTCGGTGAAAGAGGGCGACGAGGTAGTAGGTAACGAG
ACCCGTGTGAAGGTGGTTAAGAACAAGGTGGCGCCGCCATTTAAGCAGACCGAGTTCCAGATCATGTACGGCGAGGGCAT
CAACCTGCTGGGAGAGATCGTCGATTATGGCGTCAAGCTGGGGTTGGTCGACAAGGCCGGTGCTTGGTACAGCTATAAGG
GAGAGAAAATCGGGCAGGGCAAGGCCAACGCGGTGAAATTCCTGAAAGAAAACCCGGATATCCGCGATGAGATCGAAGGG
CAGCTGCGCGCTCAGATGCTGGGCGATTTGGCGCCGGCCTCTCCTGAAGAAGTGGTGGCGGACACTTCGGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HMX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.907

99.71

0.777
  recA Acinetobacter baylyi ADP1

71.884

100

0.719
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.304

100

0.713
  recA Vibrio cholerae strain A1552

71.304

100

0.713
  recA Acinetobacter baumannii D1279779

74.312

94.783

0.704
  recA Neisseria gonorrhoeae strain FA1090

73.231

94.203

0.69
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Neisseria gonorrhoeae MS11

73.231

94.203

0.69
  recA Glaesserella parasuis strain SC1401

68.406

100

0.684
  recA Ralstonia pseudosolanacearum GMI1000

72.99

90.145

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.972

94.783

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

93.043

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

61.404

99.13

0.609
  recA Helicobacter pylori strain NCTC11637

65.831

92.464

0.609
  recA Helicobacter pylori 26695

65.831

92.464

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.942

0.603
  recA Streptococcus mutans UA159

62.154

94.203

0.586
  recA Streptococcus pneumoniae Rx1

61.28

95.072

0.583
  recA Streptococcus pneumoniae D39

61.28

95.072

0.583
  recA Streptococcus pneumoniae R6

61.28

95.072

0.583
  recA Streptococcus pneumoniae TIGR4

61.28

95.072

0.583
  recA Streptococcus mitis NCTC 12261

61.28

95.072

0.583
  recA Streptococcus mitis SK321

60.671

95.072

0.577
  recA Streptococcus pyogenes NZ131

60.123

94.493

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

94.203

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.589

94.493

0.554

Multiple sequence alignment