Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A1140_RS04260 Genome accession   NZ_CP014834
Coordinates   905003..906049 (+) Length   348 a.a.
NCBI ID   WP_103209364.1    Uniprot ID   -
Organism   Staphylococcus felis strain BN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900003..911049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1140_RS04235 (A1140_04160) - 900872..901579 (+) 708 WP_349421217.1 SDR family oxidoreductase -
  A1140_RS04240 (A1140_04165) - 901632..902465 (+) 834 WP_103209371.1 DUF3388 domain-containing protein -
  A1140_RS04245 (A1140_04170) - 902481..902873 (+) 393 WP_115856021.1 helix-turn-helix domain-containing protein -
  A1140_RS04250 (A1140_04175) pgsA 902913..903500 (+) 588 WP_115856022.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A1140_RS04255 (A1140_04180) - 903696..904841 (+) 1146 WP_115890385.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  A1140_RS04260 (A1140_04185) recA 905003..906049 (+) 1047 WP_103209364.1 recombinase RecA Machinery gene
  A1140_RS04265 (A1140_04190) rny 906437..907996 (+) 1560 WP_103209362.1 ribonuclease Y -
  A1140_RS04270 (A1140_04195) - 908841..909065 (-) 225 WP_103209574.1 hypothetical protein -
  A1140_RS04275 (A1140_04200) - 909305..909685 (+) 381 WP_115856629.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37832.78 Da        Isoelectric Point: 5.3353

>NTDB_id=174432 A1140_RS04260 WP_103209364.1 905003..906049(+) (recA) [Staphylococcus felis strain BN1]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLSDNPQIENAIDR
QLREKLGIFDGDVEESHPSEEAQTLFDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=174432 A1140_RS04260 WP_103209364.1 905003..906049(+) (recA) [Staphylococcus felis strain BN1]
TTGGATAACGAACGTCAAAAGGCATTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTCATGAA
ACTCGGTGACAATAAAGATAGACGTGTATCAAGTGTATCAAGTGGTTCTGTTACATTAGACCATGCACTCGGTGTTGGTG
GCTACCCGAAAGGCCGTATTATAGAGGTGTATGGTCCAGAAAGTTCAGGTAAAACTACGGTTGCATTACATGCCATTGCC
GAAGTACAAAAAAATGGTGGGGTGGCTGCATTTATTGATGCAGAACATGCGCTTGACCCAGTGTATGCTGAAGCATTAGG
TGTCGACATTAATAATTTATATTTATCACAACCCGATCATGGTGAACAGGGGCTTGAGATTGCTGAAGCATTTGTACGTA
GTGGAGCGGTAGATATCGTTATTGTCGATTCAGTTGCAGCACTTACACCAAAAGCCGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTAGGTTTACAAGCGCGATTAATGTCACAAGCGCTAAGAAAGTTGTCAGCAGCTATCTCAAAGTCTAAAACGAC
AGCCATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTAATGTTCGGAAATCCGGAGACGACGCCTGGTGGACGAGCTT
TAAAATTCTATAGTTCAGTACGTTTAGAAGTACGTCGTGCAGAACAACTTAAGCAAGGTCAAGACATTGTAGGTAACCGT
ACAAAAATAAAAGTAGTTAAAAACAAAGTGGCACCACCATTCAAAGTAGCTGAAGTTGACATTATGTATGGTAAGGGTAT
TTCACGTGAAGGTGAACTTATAGATTTAGGTGTACAATATGATATTGTAGATAAGTCTGGTGCTTGGTACTCTTATAACG
GTGAACGCATGGGACAAGGTAAAGAAAACGTGAAACAATTTTTAAGTGACAATCCTCAAATTGAAAATGCAATTGATCGT
CAATTACGTGAAAAATTAGGTATTTTTGATGGAGATGTAGAAGAGTCCCACCCTTCAGAAGAAGCACAAACATTATTTGA
CGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.301

93.678

0.724
  recA Latilactobacillus sakei subsp. sakei 23K

69.501

97.989

0.681
  recA Streptococcus mutans UA159

66.282

99.713

0.661
  recA Streptococcus mitis NCTC 12261

65.607

99.425

0.652
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mitis SK321

65.318

99.425

0.649
  recA Streptococcus pneumoniae Rx1

66.366

95.69

0.635
  recA Streptococcus pneumoniae D39

66.366

95.69

0.635
  recA Streptococcus pneumoniae R6

66.366

95.69

0.635
  recA Streptococcus pneumoniae TIGR4

66.366

95.69

0.635
  recA Acinetobacter baylyi ADP1

62.463

97.989

0.612
  recA Acinetobacter baumannii D1279779

65.031

93.678

0.609
  recA Lactococcus lactis subsp. cremoris KW2

64.048

95.115

0.609
  recA Neisseria gonorrhoeae MS11

61.337

98.851

0.606
  recA Neisseria gonorrhoeae MS11

61.337

98.851

0.606
  recA Neisseria gonorrhoeae strain FA1090

61.337

98.851

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

94.54

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.577

93.678

0.586
  recA Vibrio cholerae strain A1552

62.577

93.678

0.586
  recA Helicobacter pylori 26695

62.195

94.253

0.586
  recA Helicobacter pylori strain NCTC11637

61.89

94.253

0.583
  recA Pseudomonas stutzeri DSM 10701

58.944

97.989

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.115

0.575
  recA Ralstonia pseudosolanacearum GMI1000

63.578

89.943

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.755

91.667

0.566
  recA Glaesserella parasuis strain SC1401

60.062

92.816

0.557

Multiple sequence alignment