Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A0U92_RS00135 Genome accession   NZ_CP014692
Coordinates   25511..26536 (-) Length   341 a.a.
NCBI ID   WP_187668899.1    Uniprot ID   -
Organism   Acetobacter aceti strain TMW2.1153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20511..31536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0U92_RS00110 (A0U92_00110) ahcY 20791..22092 (-) 1302 WP_077811454.1 adenosylhomocysteinase -
  A0U92_RS00115 (A0U92_00115) - 22244..22459 (+) 216 WP_077811455.1 hypothetical protein -
  A0U92_RS00120 (A0U92_00120) - 22466..23164 (+) 699 WP_077811456.1 helix-turn-helix transcriptional regulator -
  A0U92_RS00125 (A0U92_00125) - 23270..24529 (-) 1260 WP_077811457.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  A0U92_RS00130 (A0U92_00130) - 24759..25448 (+) 690 WP_077811458.1 sulfotransferase family 2 domain-containing protein -
  A0U92_RS00135 (A0U92_00135) recA 25511..26536 (-) 1026 WP_187668899.1 recombinase RecA Machinery gene
  A0U92_RS00145 (A0U92_00145) ppa 27297..27821 (-) 525 WP_077811460.1 inorganic diphosphatase -
  A0U92_RS00155 (A0U92_00155) ettA 28124..29803 (+) 1680 WP_077811461.1 energy-dependent translational throttle protein EttA -
  A0U92_RS00160 (A0U92_00160) - 30118..30663 (+) 546 WP_077811462.1 GNAT family N-acetyltransferase -
  A0U92_RS00165 (A0U92_00165) - 30884..31276 (+) 393 WP_257788169.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36731.96 Da        Isoelectric Point: 5.9490

>NTDB_id=173275 A0U92_RS00135 WP_187668899.1 25511..26536(-) (recA) [Acetobacter aceti strain TMW2.1153]
MDKTKALEGALSQIERAFGKGSIMRLGQRPKEEADAISTGSLGLDIALGIGGMPRGRIVEIYGPESSGKTTLALHIIAEA
QKKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSH
VGLHARLMSQALRKLTGTVSRSNTLLVFLNQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTR
VKVVKNKMAPPFRQVEFDIMYGEGISKMGELIDLGVKAGVVEKSGAWFSYDSQRVGQGRENAKNFLREHPEMAHAIEHRI
REQAGVVAEAMMDGPDEGEEN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=173275 A0U92_RS00135 WP_187668899.1 25511..26536(-) (recA) [Acetobacter aceti strain TMW2.1153]
ATGGACAAGACGAAGGCCCTTGAAGGGGCGCTGAGCCAGATTGAGCGTGCTTTCGGCAAAGGGTCGATCATGCGCCTCGG
ACAACGTCCGAAAGAAGAAGCGGACGCGATCTCGACCGGTTCGCTCGGTCTTGATATCGCGCTGGGCATCGGTGGCATGC
CGCGTGGACGTATCGTCGAGATCTATGGCCCGGAAAGCTCGGGCAAGACGACGCTGGCGTTGCACATCATTGCCGAAGCC
CAGAAAAAGGGCGGCACCTGCGCCTTTATTGACGCCGAGCACGCCCTTGATCCCGGTTACGCCCGCAAGCTGGGCGTGGA
TGTGGACAATCTGCTGATCAGCCAGCCGGACGCCGGTGAGCAGGCGCTGGAAATCGCTGATACGCTGGTTCGGTCGGGGG
CGGTTGACGTGCTGGTGGTCGACAGTGTCGCCGCCCTTGTGCCGCGTGCGGAACTGGAAGGCGATATGGGCGACAGCCAT
GTCGGTCTTCATGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACGGGCACCGTTTCACGCTCCAACACGCTGCTGGT
GTTCCTGAACCAGATCCGTCTGAAAATCGGCGTGATGTTCGGTAATCCGGAGACGACAACAGGCGGTAACGCCCTGAAGT
TCTATGCCTCCGTTCGTCTGGATATCCGTCGTATCGGGTCCATCAAGGACAAGGATGAGGTCGTCGGCAACCAGACCCGC
GTGAAAGTGGTCAAGAACAAGATGGCCCCTCCCTTCCGGCAGGTCGAGTTCGACATCATGTATGGCGAAGGCATCAGCAA
GATGGGTGAACTGATCGACCTCGGCGTGAAGGCCGGTGTGGTTGAGAAATCCGGCGCATGGTTCTCTTATGACAGCCAGC
GTGTTGGTCAGGGCCGTGAAAACGCCAAGAACTTCCTGCGCGAACATCCGGAAATGGCGCATGCCATTGAACATCGCATT
CGTGAACAGGCCGGCGTGGTGGCCGAAGCCATGATGGACGGCCCGGACGAGGGCGAAGAGAACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.847

99.413

0.674
  recA Neisseria gonorrhoeae MS11

67.847

99.413

0.674
  recA Neisseria gonorrhoeae strain FA1090

67.847

99.413

0.674
  recA Ralstonia pseudosolanacearum GMI1000

70.122

96.188

0.674
  recA Glaesserella parasuis strain SC1401

71.473

93.548

0.669
  recA Acinetobacter baylyi ADP1

66.667

99.413

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.497

100

0.657
  recA Pseudomonas stutzeri DSM 10701

69.688

93.842

0.654
  recA Helicobacter pylori 26695

65.579

98.827

0.648
  recA Helicobacter pylori strain NCTC11637

65.579

98.827

0.648
  recA Vibrio cholerae strain A1552

68.224

94.135

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.224

94.135

0.642
  recA Acinetobacter baumannii D1279779

68.012

94.428

0.642
  recA Bacillus subtilis subsp. subtilis str. 168

66.154

95.308

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

96.188

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

95.308

0.595
  recA Streptococcus mitis SK321

61.212

96.774

0.592
  recA Streptococcus mitis NCTC 12261

61.212

96.774

0.592
  recA Streptococcus pneumoniae Rx1

60.909

96.774

0.589
  recA Streptococcus pneumoniae D39

60.909

96.774

0.589
  recA Streptococcus pneumoniae R6

60.909

96.774

0.589
  recA Streptococcus pneumoniae TIGR4

60.909

96.774

0.589
  recA Streptococcus mutans UA159

59.94

97.361

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

93.842

0.581
  recA Streptococcus pyogenes NZ131

60.061

96.188

0.578
  recA Lactococcus lactis subsp. cremoris KW2

58.434

97.361

0.569

Multiple sequence alignment