Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PG2T_RS09930 Genome accession   NZ_CP014671
Coordinates   2099163..2100188 (+) Length   341 a.a.
NCBI ID   WP_068804721.1    Uniprot ID   -
Organism   Immundisolibacter cernigliae strain TR3.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2094163..2105188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG2T_RS09905 (PG2T_09925) nusB 2094365..2094799 (+) 435 WP_068804713.1 transcription antitermination factor NusB -
  PG2T_RS09910 (PG2T_09930) thiL 2094832..2095785 (+) 954 WP_068804714.1 thiamine-phosphate kinase -
  PG2T_RS09915 (PG2T_09935) - 2095769..2096275 (+) 507 WP_068804715.1 phosphatidylglycerophosphatase A -
  PG2T_RS09920 (PG2T_09940) thpR 2096275..2096793 (+) 519 WP_068804719.1 RNA 2',3'-cyclic phosphodiesterase -
  PG2T_RS09925 (PG2T_09945) - 2096760..2098541 (-) 1782 WP_083214867.1 sigma-54-dependent Fis family transcriptional regulator -
  PG2T_RS09930 (PG2T_09950) recA 2099163..2100188 (+) 1026 WP_068804721.1 recombinase RecA Machinery gene
  PG2T_RS09935 (PG2T_09955) - 2100205..2100666 (+) 462 WP_068804724.1 regulatory protein RecX -
  PG2T_RS09940 (PG2T_09960) alaS 2100663..2103278 (+) 2616 WP_068804727.1 alanine--tRNA ligase -
  PG2T_RS09945 (PG2T_09965) - 2103321..2104544 (+) 1224 WP_068804735.1 aspartate kinase -
  PG2T_RS09950 (PG2T_09970) csrA 2104656..2104856 (+) 201 WP_068808140.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36431.74 Da        Isoelectric Point: 6.3010

>NTDB_id=173194 PG2T_RS09930 WP_068804721.1 2099163..2100188(+) (recA) [Immundisolibacter cernigliae strain TR3.2]
MDDNKQKALTAALGQIEKQFGKGAVMRLGDPGSVRDVEAISTGSLYLDIALGVGGLPRGRVIEIFGPESSGKTTIALQTV
AQMQRIGGTAAFVDAEHALDPSYAEKLGINIADLLISQPDTGEQALEIVDMLVRSGAVDIVVVDSVAALTPRAEIEGEMG
DSHVGLHARLMSQALRKLTASISRSNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGN
ETRVKVVKNKVSPPFKTAEFDILYGAGVSREGEILDLGVNLGLIEKSGAWYSYNGERIGQGRDNVRDFLRANPETAEAIE
ALIRSRMLPARKVAAEAASPV

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=173194 PG2T_RS09930 WP_068804721.1 2099163..2100188(+) (recA) [Immundisolibacter cernigliae strain TR3.2]
ATGGACGACAACAAGCAGAAGGCACTGACGGCTGCACTCGGGCAGATCGAGAAGCAGTTCGGCAAGGGTGCCGTCATGCG
TCTGGGCGATCCTGGATCCGTCCGTGATGTTGAAGCAATCTCCACCGGCTCGCTGTATCTGGATATCGCGCTGGGCGTCG
GCGGCCTGCCGCGCGGCCGCGTGATCGAAATCTTTGGACCCGAATCGTCCGGCAAGACCACCATCGCCCTGCAGACCGTG
GCCCAGATGCAGCGCATCGGCGGCACGGCGGCCTTCGTGGATGCCGAGCACGCACTCGACCCGTCCTACGCCGAGAAGCT
GGGTATCAATATCGCCGACCTGCTGATATCGCAGCCGGATACCGGCGAGCAGGCGCTCGAAATCGTCGACATGCTGGTGC
GCTCCGGCGCGGTCGACATTGTGGTGGTCGACTCGGTGGCAGCGCTGACGCCGCGAGCTGAAATCGAAGGCGAGATGGGC
GACTCGCACGTCGGCCTGCACGCGCGCCTGATGTCGCAGGCCCTGCGCAAGCTGACTGCCAGCATCAGCCGCTCGAACAC
CACGGTCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCCGAAACCACCACCGGTGGCAATG
CGCTCAAGTTCTATGCCTCGGTGCGTCTGGACATCCGCCGTATCGGCTCGATCAAGAAAGGCGAAGAGGTGATCGGCAAC
GAAACCCGCGTCAAGGTGGTCAAGAACAAGGTCTCGCCGCCGTTCAAGACCGCCGAGTTCGACATCCTGTACGGCGCCGG
GGTTTCCCGCGAGGGCGAGATTCTGGACCTGGGCGTGAACCTGGGCCTGATCGAGAAATCGGGCGCCTGGTATTCCTACA
ATGGCGAGCGCATAGGCCAGGGCCGCGACAACGTGCGCGATTTCCTGCGTGCCAACCCCGAAACGGCCGAGGCCATCGAG
GCGCTGATTCGCAGCCGCATGCTGCCGGCGCGCAAGGTGGCGGCCGAGGCGGCAAGTCCGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.088

100

0.701
  recA Ralstonia pseudosolanacearum GMI1000

75.962

91.496

0.695
  recA Neisseria gonorrhoeae MS11

72.308

95.308

0.689
  recA Neisseria gonorrhoeae MS11

72.308

95.308

0.689
  recA Neisseria gonorrhoeae strain FA1090

72.308

95.308

0.689
  recA Acinetobacter baylyi ADP1

71.341

96.188

0.686
  recA Vibrio cholerae strain A1552

70.732

96.188

0.68
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.732

96.188

0.68
  recA Acinetobacter baumannii D1279779

70.732

96.188

0.68
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

97.067

0.645
  recA Glaesserella parasuis strain SC1401

66.462

95.308

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

65.015

94.721

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

96.188

0.613
  recA Streptococcus mutans UA159

62.883

95.601

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

62.539

94.721

0.592
  recA Helicobacter pylori strain NCTC11637

61.585

96.188

0.592
  recA Helicobacter pylori 26695

61.585

96.188

0.592
  recA Streptococcus pyogenes NZ131

61.094

96.481

0.589
  recA Streptococcus pneumoniae Rx1

60.856

95.894

0.584
  recA Streptococcus pneumoniae D39

60.856

95.894

0.584
  recA Streptococcus pneumoniae R6

60.856

95.894

0.584
  recA Streptococcus pneumoniae TIGR4

60.856

95.894

0.584
  recA Streptococcus mitis NCTC 12261

61.111

95.015

0.581
  recA Streptococcus mitis SK321

61.111

95.015

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.327

95.894

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.154

95.308

0.554

Multiple sequence alignment