Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DSM2777_RS21415 Genome accession   NZ_CP014608
Coordinates   4571293..4572345 (-) Length   350 a.a.
NCBI ID   WP_046458358.1    Uniprot ID   A0AA91IPT5
Organism   Obesumbacterium proteus strain DSM 2777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4566293..4577345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM2777_RS21400 (DSM2777_21400) csrA 4567585..4567770 (-) 186 WP_004091602.1 carbon storage regulator CsrA -
  DSM2777_RS21405 (DSM2777_21405) alaS 4568025..4570652 (-) 2628 WP_061555104.1 alanine--tRNA ligase -
  DSM2777_RS21410 (DSM2777_21410) recX 4570787..4571227 (-) 441 WP_061555105.1 recombination regulator RecX -
  DSM2777_RS21415 (DSM2777_21415) recA 4571293..4572345 (-) 1053 WP_046458358.1 recombinase RecA Machinery gene
  DSM2777_RS21420 (DSM2777_21420) pncC 4572418..4572906 (-) 489 WP_046458359.1 nicotinamide-nucleotide amidase -
  DSM2777_RS21425 (DSM2777_21425) - 4573029..4573409 (-) 381 WP_082790902.1 energy transducer TonB -
  DSM2777_RS21430 (DSM2777_21430) - 4573441..4573896 (-) 456 WP_061555106.1 hypothetical protein -
  DSM2777_RS21435 (DSM2777_21435) - 4573893..4574918 (-) 1026 WP_061555107.1 ABC transporter substrate-binding protein -
  DSM2777_RS21440 (DSM2777_21440) - 4574938..4577094 (-) 2157 WP_071889963.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37436.69 Da        Isoelectric Point: 4.9307

>NTDB_id=172631 DSM2777_RS21415 WP_046458358.1 4571293..4572345(-) (recA) [Obesumbacterium proteus strain DSM 2777]
MDENKQRALAAALGQIEKQFGKGSIMRLGDTQTLDIDSVSTGSLSLDVALGIGGLPMGRVVEIFGPESSGKTTLTLSVIA
SAQAAGKTCAFIDAEHALDPIYAGKLGVQVDDLLISQPDTGEQALEICDALVRSGAVDVIVVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKDGDEVVGNE
TRVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLVDKSGAWYAYNGDKIGQGKSNSMKYLQENPAIRAELDT
KLREMLLSHAAAENANHKPSDDEELLEDDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=172631 DSM2777_RS21415 WP_046458358.1 4571293..4572345(-) (recA) [Obesumbacterium proteus strain DSM 2777]
ATGGACGAGAACAAACAAAGGGCTCTAGCCGCTGCGTTAGGCCAGATCGAAAAGCAGTTCGGTAAAGGTTCCATTATGCG
TCTTGGTGATACCCAGACGTTGGATATTGATTCTGTATCTACAGGTTCTCTGAGTCTGGACGTTGCTCTGGGCATTGGCG
GTTTGCCGATGGGCCGTGTGGTTGAAATCTTCGGGCCAGAATCTTCCGGTAAAACTACGCTGACGCTGTCGGTTATTGCC
AGTGCACAGGCTGCGGGCAAAACTTGTGCGTTCATCGATGCTGAGCATGCGCTGGACCCAATCTACGCTGGTAAGTTAGG
TGTGCAAGTTGATGATTTGCTGATCTCTCAGCCAGATACCGGCGAACAGGCATTAGAAATTTGTGATGCTCTGGTACGTT
CAGGTGCGGTTGACGTTATCGTCGTGGACTCCGTTGCTGCACTGACGCCTAAAGCAGAAATTGAAGGCGAGATGGGTGAT
TCCCACGTTGGTTTGCAAGCGCGTTTGATGTCTCAGGCGCTGCGTAAACTGACCGCTAATATCAAGAACGCGAACTGCTT
GGTTATCTTTATCAACCAGATCCGTATGAAAATCGGCGTTATGTTCGGTAACCCAGAAACCACTACCGGTGGTAATGCGC
TGAAGTTCTACTCTTCTGTTCGCTTGGATATCCGTCGTATCGGCGCGATTAAAGATGGCGATGAAGTCGTCGGTAACGAA
ACACGCGTGAAAGTGGTTAAAAACAAGGTTGCTCCACCATTCCGTCAGGCTGAATTCCAGATCCTTTACGGCGCGGGTAT
TTCTAAAGAAAGCGAGCTGATCGATCTAGGTGTTAAGCATAAGCTGGTGGATAAATCCGGTGCTTGGTATGCCTATAACG
GTGACAAGATTGGACAGGGTAAATCAAACTCCATGAAATACTTGCAGGAAAACCCTGCTATTCGTGCCGAGTTAGATACC
AAACTGCGTGAAATGTTGTTGAGCCACGCAGCCGCAGAGAACGCAAACCATAAGCCTTCAGATGATGAAGAGCTGTTGGA
AGACGACGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.006

97.429

0.76
  recA Vibrio cholerae strain A1552

80.488

93.714

0.754
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.488

93.714

0.754
  recA Glaesserella parasuis strain SC1401

72.521

100

0.731
  recA Acinetobacter baylyi ADP1

70.402

99.429

0.7
  recA Acinetobacter baumannii D1279779

69.477

98.286

0.683
  recA Ralstonia pseudosolanacearum GMI1000

76.206

88.857

0.677
  recA Neisseria gonorrhoeae MS11

72.393

93.143

0.674
  recA Neisseria gonorrhoeae MS11

72.393

93.143

0.674
  recA Neisseria gonorrhoeae strain FA1090

72.393

93.143

0.674
  recA Helicobacter pylori 26695

61.207

99.429

0.609
  recA Helicobacter pylori strain NCTC11637

61.207

99.429

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.771

91.143

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

91.714

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

58.213

99.143

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.571

0.574
  recA Streptococcus pneumoniae D39

56.338

100

0.571
  recA Streptococcus pneumoniae Rx1

56.338

100

0.571
  recA Streptococcus pneumoniae R6

56.338

100

0.571
  recA Streptococcus pneumoniae TIGR4

56.338

100

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.559

95.143

0.557
  recA Streptococcus mitis SK321

59.752

92.286

0.551
  recA Streptococcus mitis NCTC 12261

59.752

92.286

0.551
  recA Streptococcus mutans UA159

58.769

92.857

0.546
  recA Streptococcus pyogenes NZ131

57.846

92.857

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

92.286

0.529

Multiple sequence alignment