Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AYJ57_RS13735 Genome accession   NZ_CP014595
Coordinates   2865833..2866900 (+) Length   355 a.a.
NCBI ID   WP_066106368.1    Uniprot ID   A0A1B1PRW5
Organism   Salipiger sp. CCB-MM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2860833..2871900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ57_RS13720 (AYJ57_13720) - 2861425..2862579 (+) 1155 WP_066106361.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AYJ57_RS13725 (AYJ57_13725) - 2862857..2865049 (+) 2193 WP_237220218.1 PAS domain-containing sensor histidine kinase -
  AYJ57_RS13730 (AYJ57_13730) - 2865059..2865652 (-) 594 WP_066106364.1 gamma-glutamyl kinase -
  AYJ57_RS13735 (AYJ57_13735) recA 2865833..2866900 (+) 1068 WP_066106368.1 recombinase RecA Machinery gene
  AYJ57_RS13740 (AYJ57_13740) - 2867131..2867577 (+) 447 WP_066106371.1 DUF302 domain-containing protein -
  AYJ57_RS13745 (AYJ57_13745) - 2867653..2867976 (-) 324 WP_066106374.1 iron-sulfur cluster assembly accessory protein -
  AYJ57_RS13750 (AYJ57_13750) - 2868110..2869276 (+) 1167 WP_066106377.1 deoxyguanosinetriphosphate triphosphohydrolase -
  AYJ57_RS13755 (AYJ57_13755) - 2869365..2871230 (+) 1866 WP_066106380.1 sodium:proton antiporter -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37935.00 Da        Isoelectric Point: 4.9674

>NTDB_id=172598 AYJ57_RS13735 WP_066106368.1 2865833..2866900(+) (recA) [Salipiger sp. CCB-MM3]
MATADLLTMDSKRNADRQKALDSALAQIERQFGKGSIMKLGGDNALRDIEATSTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHAVAEEQKKGGVAAFVDAEHALDPQYAKKLGVDLDELLISQPDTGEQALEITDTLVRSGAVSLVVVDSVAA
LTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSIARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRI
GSIKDRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGAWYSYGDERIGQGRENAKNY
LKENTQIATEIEDKIRAAHGLEFNGGDGDDAVTED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=172598 AYJ57_RS13735 WP_066106368.1 2865833..2866900(+) (recA) [Salipiger sp. CCB-MM3]
ATGGCAACGGCAGATCTTCTGACTATGGACAGCAAGCGCAACGCGGACAGGCAAAAGGCACTCGACTCGGCGCTGGCCCA
GATCGAGCGGCAATTCGGCAAGGGCTCGATCATGAAGCTGGGCGGCGACAACGCCCTGCGCGACATCGAGGCAACCTCCA
CCGGCTCGCTGGGGCTCGACATCGCCCTCGGCATTGGCGGCCTGCCCAAGGGCCGGATCATCGAGATCTATGGCCCCGAA
AGCTCGGGCAAGACCACGCTCACCCTGCATGCGGTGGCCGAGGAACAGAAAAAGGGCGGCGTTGCGGCCTTTGTCGACGC
GGAACACGCGCTCGACCCGCAATACGCCAAGAAACTGGGCGTCGATCTTGACGAGCTGCTGATCTCGCAGCCCGACACCG
GCGAACAGGCACTGGAAATTACCGACACGCTGGTGCGCTCGGGCGCGGTCAGCCTCGTGGTGGTCGACTCCGTCGCCGCG
CTGACCCCCAAGAGCGAGCTTGAGGGCGACATGGGCGACAGCTCTGTCGGCGTGCACGCCCGCCTGATGAGCCAGGCGAT
GCGCAAGCTCACCGGCTCGATCGCGCGCAGCAACTGCATGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACAGCTCGGTGCGCCTCGATATCCGCCGCATC
GGCTCGATCAAGGACCGGGACGAAGTGGTCGGCAACGCCACCCGCGTCAAAGTGGTGAAGAACAAGGTCGCGCCGCCGTT
CAAACAGGTCGAGTTCGACATCATGTACGGCGAAGGCATCTCGAAAACCGGCGAACTGCTGGACCTTGGGGTCAAGGCCG
GCGTGGTCGACAAATCCGGCGCCTGGTATTCCTACGGTGACGAGCGCATCGGTCAGGGGCGTGAAAACGCCAAGAACTAC
CTGAAGGAAAACACCCAGATCGCCACCGAGATTGAGGATAAGATCCGCGCGGCGCATGGGCTCGAGTTCAACGGCGGCGA
CGGCGACGACGCGGTCACCGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1PRW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

70.821

92.676

0.656
  recA Neisseria gonorrhoeae MS11

70.821

92.676

0.656
  recA Neisseria gonorrhoeae strain FA1090

70.821

92.676

0.656
  recA Acinetobacter baumannii D1279779

71.028

90.423

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.975

88.451

0.637
  recA Acinetobacter baylyi ADP1

70.405

90.423

0.637
  recA Pseudomonas stutzeri DSM 10701

69.876

90.704

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

67.976

93.239

0.634
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

90.423

0.634
  recA Vibrio cholerae strain A1552

70.093

90.423

0.634
  recA Glaesserella parasuis strain SC1401

70.312

90.141

0.634
  recA Lactococcus lactis subsp. cremoris KW2

62.571

98.592

0.617
  recA Helicobacter pylori 26695

66.159

92.394

0.611
  recA Helicobacter pylori strain NCTC11637

66.159

92.394

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.671

94.085

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.854

92.394

0.608
  recA Streptococcus pneumoniae R6

62.941

95.775

0.603
  recA Streptococcus pneumoniae D39

62.941

95.775

0.603
  recA Streptococcus pneumoniae TIGR4

62.941

95.775

0.603
  recA Streptococcus pneumoniae Rx1

62.941

95.775

0.603
  recA Streptococcus mitis NCTC 12261

62.908

94.93

0.597
  recA Streptococcus mitis SK321

62.611

94.93

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

91.831

0.577
  recA Streptococcus pyogenes NZ131

61.702

92.676

0.572
  recA Streptococcus mutans UA159

61.515

92.958

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

91.268

0.546

Multiple sequence alignment