Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AY601_RS23990 Genome accession   NZ_CP014504
Coordinates   5667841..5668854 (-) Length   337 a.a.
NCBI ID   WP_183868471.1    Uniprot ID   -
Organism   Pedobacter cryoconitis strain PAMC 27485     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5662841..5673854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AY601_RS23980 (AY601_4840) tsaD 5666493..5667494 (+) 1002 WP_068406200.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AY601_RS23985 (AY601_4841) - 5667553..5667732 (+) 180 WP_068406203.1 hypothetical protein -
  AY601_RS23990 (AY601_4842) recA 5667841..5668854 (-) 1014 WP_183868471.1 recombinase RecA Machinery gene
  AY601_RS23995 (AY601_4843) nth 5668979..5669647 (-) 669 WP_068406206.1 endonuclease III -
  AY601_RS24000 (AY601_4844) - 5669709..5669906 (-) 198 WP_068406209.1 hypothetical protein -
  AY601_RS24005 (AY601_4845) - 5670093..5670668 (-) 576 WP_068406212.1 RNA polymerase sigma factor -
  AY601_RS24010 (AY601_4846) uvrA 5670935..5673748 (+) 2814 WP_068406216.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36390.03 Da        Isoelectric Point: 5.3527

>NTDB_id=171997 AY601_RS23990 WP_183868471.1 5667841..5668854(-) (recA) [Pedobacter cryoconitis strain PAMC 27485]
MIPNPDKLKALQLTLDKLEKSYGKGAVMKLGDTPTESIESISTGSITLDIALGIGGVPKGRVIEIYGPESSGKTTLATHI
IAEAQKKGGVAAFIDAEHAFDKFYAKKLGVDVDNLLIAQPDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKAEIEGEM
GDSKMGLQARLMSQALRKLTGTIAKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDADEVSG
NRVKVKIVKNKVAPPFRIAEFDIMFGQGISKVGEIIDLGVDFNIVKKAGSWFSYGETKLGQGRDAVKQLLLDNPELADEI
ERKIREEVTGEKLEELL

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=171997 AY601_RS23990 WP_183868471.1 5667841..5668854(-) (recA) [Pedobacter cryoconitis strain PAMC 27485]
ATGATCCCAAACCCAGATAAATTAAAAGCATTACAACTTACATTAGATAAGTTAGAAAAATCTTACGGTAAAGGTGCCGT
GATGAAATTAGGTGATACACCTACCGAATCTATTGAGTCTATCTCAACCGGCTCTATTACCTTAGATATCGCTTTAGGTA
TTGGTGGTGTACCAAAAGGACGTGTGATCGAGATTTACGGTCCGGAATCTTCTGGTAAAACTACTTTGGCAACCCATATC
ATTGCTGAAGCACAGAAAAAAGGTGGTGTAGCCGCATTTATTGATGCAGAACATGCATTTGATAAATTCTATGCAAAGAA
ATTAGGTGTAGATGTAGACAACCTTTTAATTGCACAGCCAGATAACGGTGAGCAGGCTTTAGAAATCGCTGATAACCTGA
TCAGATCAGGGGCTATTGATGTCATCGTGATTGACTCGGTTGCAGCTTTAGTACCAAAAGCAGAGATCGAAGGTGAAATG
GGTGATTCTAAAATGGGTCTTCAGGCACGTTTAATGTCTCAGGCGCTAAGAAAGCTAACAGGAACAATTGCTAAAACAGG
ATGTTGCTGTATTTTCATCAACCAGTTACGTGAAAAAATTGGTGTGATGTTCGGTAACCCGGAAACAACAACTGGTGGTA
ATGCTTTGAAATTCTACGCTTCTGTACGTCTTGATATCCGCAGAACTTCTCAGATTAAAGATGCTGATGAAGTTTCAGGT
AACAGAGTAAAAGTAAAAATCGTTAAAAACAAAGTAGCGCCTCCATTCCGAATTGCAGAATTCGATATTATGTTTGGTCA
GGGAATCTCTAAAGTTGGTGAGATCATTGACTTAGGTGTAGACTTCAATATTGTTAAAAAAGCAGGTTCATGGTTCTCTT
ACGGTGAAACTAAATTAGGACAAGGAAGAGATGCTGTTAAACAGTTATTATTAGACAATCCAGAACTAGCTGACGAAATC
GAAAGAAAAATCAGAGAAGAAGTAACTGGTGAGAAATTAGAAGAATTGTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.084

98.516

0.7
  recA Helicobacter pylori 26695

65.35

97.626

0.638
  recA Helicobacter pylori strain NCTC11637

65.046

97.626

0.635
  recA Ralstonia pseudosolanacearum GMI1000

68.489

92.285

0.632
  recA Acinetobacter baumannii D1279779

65.944

95.846

0.632
  recA Acinetobacter baylyi ADP1

65.944

95.846

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

96.736

0.629
  recA Neisseria gonorrhoeae MS11

65.732

95.252

0.626
  recA Neisseria gonorrhoeae MS11

65.732

95.252

0.626
  recA Neisseria gonorrhoeae strain FA1090

65.732

95.252

0.626
  recA Pseudomonas stutzeri DSM 10701

64.706

95.846

0.62
  recA Glaesserella parasuis strain SC1401

65.204

94.659

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

63.665

95.549

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

95.252

0.602
  recA Vibrio cholerae strain A1552

63.24

95.252

0.602
  recA Streptococcus pyogenes NZ131

61.728

96.142

0.593
  recA Streptococcus mitis NCTC 12261

58.754

100

0.588
  recA Streptococcus pneumoniae TIGR4

58.457

100

0.585
  recA Streptococcus pneumoniae Rx1

58.457

100

0.585
  recA Streptococcus pneumoniae D39

58.457

100

0.585
  recA Streptococcus pneumoniae R6

58.457

100

0.585
  recA Streptococcus mitis SK321

59.877

96.142

0.576
  recA Streptococcus mutans UA159

58.951

96.142

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.19

95.252

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

94.955

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.5

94.955

0.546

Multiple sequence alignment