Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AYM39_RS07145 Genome accession   NZ_CP014360
Coordinates   1544484..1545533 (+) Length   349 a.a.
NCBI ID   WP_064021085.1    Uniprot ID   A0A172U7N6
Organism   Methylomonas sp. DH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539484..1550533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM39_RS07115 (AYM39_07105) - 1539673..1540602 (-) 930 WP_064021079.1 ZIP family metal transporter -
  AYM39_RS07125 (AYM39_07115) - 1540863..1541435 (+) 573 WP_064021081.1 DUF2780 domain-containing protein -
  AYM39_RS07130 (AYM39_07120) - 1541479..1541877 (+) 399 WP_064021082.1 hypothetical protein -
  AYM39_RS07135 (AYM39_07125) nadA 1541941..1543038 (+) 1098 WP_064021083.1 quinolinate synthase NadA -
  AYM39_RS07140 (AYM39_07130) - 1543100..1544413 (+) 1314 WP_064021084.1 cobyrinate a,c-diamide synthase -
  AYM39_RS07145 (AYM39_07135) recA 1544484..1545533 (+) 1050 WP_064021085.1 recombinase RecA Machinery gene
  AYM39_RS07150 (AYM39_07140) - 1545496..1545993 (+) 498 WP_082880833.1 regulatory protein RecX -
  AYM39_RS23770 - 1546010..1546699 (+) 690 WP_157198112.1 hypothetical protein -
  AYM39_RS07160 (AYM39_07150) - 1547158..1547406 (+) 249 WP_197495995.1 hypothetical protein -
  AYM39_RS07165 (AYM39_07155) alaS 1547856..1550465 (+) 2610 WP_197495997.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37798.16 Da        Isoelectric Point: 5.0540

>NTDB_id=170656 AYM39_RS07145 WP_064021085.1 1544484..1545533(+) (recA) [Methylomonas sp. DH-1]
MDENKKKALGAALMQIEKQFGKGSVMRMGDVAATRDIEVVSTGSLSVDIALGCGGLPRGRIIEIYGPESSGKTTLTLQTI
AQMQKLGGTAAFVDAEHALDPVYAQKIGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDIVVIDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIGAIKKGDEVIGN
ETRVKIVKNKVAPPFKQADFEILYGEGVSFLGELVDLGVEFGFVQKSGSWYSYNNDKIGQGKDNAKQYLREHPEIAAELE
KAIREKAFASRVTTAPAHEDEDAEFNDGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=170656 AYM39_RS07145 WP_064021085.1 1544484..1545533(+) (recA) [Methylomonas sp. DH-1]
ATGGACGAAAACAAGAAAAAGGCTCTCGGCGCCGCGTTGATGCAAATCGAAAAACAATTCGGCAAGGGCTCGGTCATGCG
TATGGGCGACGTCGCCGCGACCCGCGACATCGAAGTGGTGTCCACCGGCTCTTTGTCCGTCGACATCGCTCTAGGCTGCG
GCGGCTTGCCGCGCGGCCGGATCATCGAAATTTACGGCCCCGAGTCGTCCGGTAAAACCACGTTGACGCTGCAAACCATC
GCCCAGATGCAGAAACTGGGCGGTACCGCCGCCTTCGTCGATGCCGAGCATGCGTTGGACCCGGTCTATGCGCAAAAGAT
CGGCGTCAATATCGACGACCTGCTGGTGTCGCAACCGGACACCGGCGAACAAGCGCTGGAAATCACCGACATGCTGGTGC
GCTCCGGCGCGGTCGATATCGTCGTCATCGACTCGGTGGCCGCATTGACGCCGAAAGCCGAAATCGAAGGCGACATGGGC
GACTCGCACATGGGTTTGCAGGCGCGCTTGATGTCGCAAGCCTTACGCAAACTGACCGCCAACATCAAACGCTCCAACAC
GCTGGTGATTTTCATCAACCAATTGCGGATGAAAATCGGCGTGATGTTCGGCAACCCGGAAACCACTACCGGCGGTAACG
CCCTGAAATTCTACGCCTCGGTCAGGATGGACATTCGCCGCATCGGCGCGATCAAAAAAGGCGACGAGGTGATCGGCAAC
GAAACCCGGGTCAAGATCGTCAAGAACAAAGTCGCACCGCCGTTCAAACAAGCCGACTTCGAAATCCTGTACGGCGAGGG
CGTGTCCTTCCTCGGCGAGCTGGTAGACTTGGGCGTCGAGTTCGGTTTCGTGCAAAAGTCCGGTTCCTGGTACAGCTACA
ACAACGACAAAATCGGCCAGGGCAAGGACAACGCCAAGCAATATCTGCGCGAACACCCGGAAATCGCCGCCGAACTTGAA
AAAGCCATTCGCGAGAAAGCCTTTGCCAGCAGAGTGACGACGGCTCCGGCCCATGAAGACGAAGACGCCGAGTTCAACGA
CGGCGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172U7N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.222

97.994

0.708
  recA Acinetobacter baumannii D1279779

71.93

97.994

0.705
  recA Acinetobacter baylyi ADP1

71.221

98.567

0.702
  recA Vibrio cholerae strain A1552

74.462

93.123

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.462

93.123

0.693
  recA Glaesserella parasuis strain SC1401

68.3

99.427

0.679
  recA Ralstonia pseudosolanacearum GMI1000

74.516

88.825

0.662
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae strain FA1090

70.679

92.837

0.656
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.061

94.556

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

66.46

92.264

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

93.123

0.599
  recA Streptococcus pneumoniae Rx1

63.497

93.41

0.593
  recA Streptococcus pneumoniae D39

63.497

93.41

0.593
  recA Streptococcus pneumoniae R6

63.497

93.41

0.593
  recA Streptococcus pneumoniae TIGR4

63.497

93.41

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

59.884

98.567

0.59
  recA Streptococcus pyogenes NZ131

62.195

93.983

0.585
  recA Streptococcus mutans UA159

62.27

93.41

0.582
  recA Streptococcus mitis SK321

62.346

92.837

0.579
  recA Streptococcus mitis NCTC 12261

62.346

92.837

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.269

0.576
  recA Helicobacter pylori strain NCTC11637

61.656

93.41

0.576
  recA Helicobacter pylori 26695

61.35

93.41

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.494

92.837

0.562

Multiple sequence alignment