Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CPRO_RS01980 Genome accession   NZ_CP014223
Coordinates   424763..425914 (+) Length   383 a.a.
NCBI ID   WP_066047265.1    Uniprot ID   -
Organism   Anaerotignum propionicum DSM 1682 strain X2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419763..430914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPRO_RS01955 (CPRO_03960) rimO 420287..421645 (+) 1359 WP_066047253.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CPRO_RS01960 (CPRO_03970) pgsA 421629..422162 (+) 534 WP_066053594.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CPRO_RS01965 - 422256..422492 (+) 237 WP_143148991.1 hypothetical protein -
  CPRO_RS01970 (CPRO_03980) - 422611..423852 (+) 1242 WP_066047259.1 competence/damage-inducible protein A -
  CPRO_RS01975 (CPRO_03990) - 423842..424720 (+) 879 WP_066047262.1 DMT family transporter -
  CPRO_RS01980 (CPRO_04000) recA 424763..425914 (+) 1152 WP_066047265.1 recombinase RecA Machinery gene
  CPRO_RS01985 (CPRO_04010) - 426188..426805 (+) 618 WP_066047268.1 RecX family transcriptional regulator -
  CPRO_RS01990 (CPRO_04020) - 426820..429591 (+) 2772 WP_066047271.1 tetratricopeptide repeat protein -
  CPRO_RS01995 (CPRO_04030) rplU 429720..430025 (+) 306 WP_066047275.1 50S ribosomal protein L21 -
  CPRO_RS02000 (CPRO_04040) - 430028..430360 (+) 333 WP_066047277.1 ribosomal-processing cysteine protease Prp -
  CPRO_RS02005 (CPRO_04050) rpmA 430364..430654 (+) 291 WP_066047280.1 50S ribosomal protein L27 -
  CPRO_RS15160 (CPRO_04060) - 430673..430837 (+) 165 WP_157881615.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41510.21 Da        Isoelectric Point: 4.8830

>NTDB_id=169569 CPRO_RS01980 WP_066047265.1 424763..425914(+) (recA) [Anaerotignum propionicum DSM 1682 strain X2]
MAKKDDSKKDDIRFEDKDKALSAALGYIEKQFGKGAVMKLGDSSRQMNVEVTPTGSLSLDVALGVGGIPKGRIIEIYGPE
SSGKTTVALHMVAEVQKRGGIAGYIDAEHAMDPVYAKALGVNIDELYISQPDNGEQALEIAETMVRCGAIDIVIVDSVAA
LVPKAEIEGEMGESHVGLQARLMSQALRKLTGITNKSKCTVVFINQLREKIGVIYGSPETTTGGRALKFYASVRIDIRKA
DVLKQGTELIGNRVKVKVAKNKVAPPFKTAEFDIIYGQGISKYGDILDLASEVSIINKSGSWFSYKETRIGQGRENAKQF
LQEHEDICLEVENAVREHYGLFSMAETSGQGLDGNLTDGKTLEVQGVFDTAENESGIEELDLE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=169569 CPRO_RS01980 WP_066047265.1 424763..425914(+) (recA) [Anaerotignum propionicum DSM 1682 strain X2]
TTGGCAAAAAAAGATGATTCAAAAAAAGATGACATCAGATTTGAGGATAAGGATAAGGCGCTGTCTGCGGCGTTGGGTTA
TATTGAAAAACAATTTGGCAAGGGTGCCGTGATGAAGCTGGGTGACAGCAGTCGCCAGATGAATGTGGAGGTAACGCCTA
CCGGTTCTTTAAGCTTGGATGTAGCCTTAGGTGTTGGTGGCATACCAAAGGGCAGAATTATAGAAATTTATGGCCCTGAA
TCTTCCGGTAAAACAACCGTTGCCCTTCATATGGTTGCAGAGGTGCAAAAAAGAGGAGGCATTGCCGGTTATATTGATGC
CGAACATGCCATGGACCCTGTTTATGCAAAGGCTCTGGGCGTTAATATTGATGAATTGTATATCTCCCAGCCTGATAACG
GTGAGCAGGCTTTAGAGATTGCAGAAACCATGGTTCGCTGTGGCGCCATTGATATTGTCATTGTGGATTCCGTTGCGGCA
TTGGTTCCTAAGGCAGAAATTGAAGGTGAAATGGGCGAATCCCATGTGGGTCTCCAGGCCAGATTGATGAGCCAGGCGTT
AAGAAAGTTGACGGGTATTACGAATAAATCTAAATGTACCGTAGTGTTTATTAACCAGTTGAGAGAGAAAATCGGCGTTA
TTTATGGCAGCCCTGAAACAACTACAGGTGGTCGTGCCCTTAAATTTTATGCCTCTGTTCGTATCGACATCAGAAAGGCG
GATGTGCTGAAACAAGGAACAGAGCTGATAGGAAACAGAGTTAAGGTTAAGGTAGCAAAAAACAAAGTGGCTCCACCATT
TAAAACGGCAGAGTTTGATATTATATACGGGCAGGGTATTTCCAAGTATGGAGACATTTTGGATTTAGCTTCTGAGGTAA
GCATTATTAACAAAAGCGGTTCTTGGTTCTCCTATAAGGAAACAAGAATTGGTCAAGGCAGGGAGAATGCAAAGCAATTT
TTGCAAGAGCATGAAGATATCTGCCTTGAGGTTGAAAATGCAGTGAGGGAGCATTACGGTCTGTTTTCTATGGCGGAAAC
GTCTGGACAGGGGCTAGATGGAAATCTAACGGATGGAAAGACACTGGAAGTGCAAGGTGTTTTTGACACGGCAGAAAATG
AATCTGGAATTGAAGAATTAGATTTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

67.988

85.64

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

64.759

86.684

0.561
  recA Lactococcus lactis subsp. cremoris KW2

60.282

92.689

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.573

89.295

0.559
  recA Streptococcus mitis SK321

59.437

92.689

0.551
  recA Streptococcus mitis NCTC 12261

60.458

91.123

0.551
  recA Streptococcus pneumoniae Rx1

61.357

88.512

0.543
  recA Streptococcus pneumoniae D39

61.357

88.512

0.543
  recA Streptococcus pneumoniae R6

61.357

88.512

0.543
  recA Streptococcus pneumoniae TIGR4

61.357

88.512

0.543
  recA Glaesserella parasuis strain SC1401

60.704

89.034

0.54
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.493

87.467

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.997

85.379

0.538
  recA Neisseria gonorrhoeae MS11

62.997

85.379

0.538
  recA Neisseria gonorrhoeae MS11

62.997

85.379

0.538
  recA Pseudomonas stutzeri DSM 10701

59.012

89.817

0.53
  recA Streptococcus pyogenes NZ131

61.515

86.162

0.53
  recA Acinetobacter baumannii D1279779

62.654

84.595

0.53
  recA Streptococcus mutans UA159

60.843

86.684

0.527
  recA Helicobacter pylori 26695

61.468

85.379

0.525
  recA Helicobacter pylori strain NCTC11637

61.468

85.379

0.525
  recA Acinetobacter baylyi ADP1

62.037

84.595

0.525
  recA Ralstonia pseudosolanacearum GMI1000

63.091

82.768

0.522
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.559

84.073

0.509
  recA Vibrio cholerae strain A1552

60.062

84.334

0.507
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.062

84.334

0.507

Multiple sequence alignment