Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VN23_RS07545 Genome accession   NZ_CP014222
Coordinates   1671178..1672239 (+) Length   353 a.a.
NCBI ID   WP_046352961.1    Uniprot ID   -
Organism   Janthinobacterium sp. B9-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666178..1677239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN23_RS07520 (VN23_07520) - 1666277..1666735 (-) 459 WP_046352965.1 spore coat protein U domain-containing protein -
  VN23_RS07525 (VN23_07525) - 1666930..1667382 (-) 453 WP_197433050.1 spore coat U domain-containing protein -
  VN23_RS07535 (VN23_07535) - 1667702..1668949 (-) 1248 WP_046352962.1 D-amino acid dehydrogenase -
  VN23_RS07540 (VN23_07540) - 1669220..1671076 (+) 1857 WP_052746725.1 ATP-binding protein -
  VN23_RS07545 (VN23_07545) recA 1671178..1672239 (+) 1062 WP_046352961.1 recombinase RecA Machinery gene
  VN23_RS07550 (VN23_07550) recX 1672321..1672764 (+) 444 WP_046352960.1 recombination regulator RecX -
  VN23_RS07555 (VN23_07555) - 1672947..1673786 (-) 840 WP_046353108.1 transglycosylase SLT domain-containing protein -
  VN23_RS07560 (VN23_07560) - 1673915..1674793 (-) 879 WP_046352959.1 LysR family transcriptional regulator -
  VN23_RS07565 (VN23_07565) - 1675260..1675937 (+) 678 WP_052746723.1 DsbA family protein -
  VN23_RS07570 (VN23_07570) - 1675978..1676616 (+) 639 WP_046352958.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37705.36 Da        Isoelectric Point: 5.3158

>NTDB_id=169541 VN23_RS07545 WP_046352961.1 1671178..1672239(+) (recA) [Janthinobacterium sp. B9-8]
MDDNKSKALAAALAQIERQFGKGAIMKMGENQIQGDLQVVSTGSLGLDLGLGVGGLPRGRVVEIFGPESSGKTTLCLHVV
AEVQKLGGVAAYIDAENALDPVYASKLGVNVSEMLISQPDTGEQGLEIADMLVRSGGVDIIVVDSVAALTPKAEIEGEMG
DVHVGLQARLMSQALRKLTGNIKRTNTLVIFINQLRMKIGNMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGDEII
GNQTKVKIAKNKVAPPFRIVTFDILYGEGISHEGEIIEYGVTHKIVEKAGAWYSYNGNKIGQGMENSRQYLKDNPEVAAE
IEQKIRAKLGAGGLLPIDPAALLEDGKEEELEA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=169541 VN23_RS07545 WP_046352961.1 1671178..1672239(+) (recA) [Janthinobacterium sp. B9-8]
ATGGACGACAACAAGAGCAAGGCACTCGCCGCGGCACTCGCGCAAATCGAACGCCAGTTCGGCAAAGGCGCCATCATGAA
AATGGGCGAAAATCAAATTCAAGGCGATCTGCAAGTGGTTTCCACCGGCTCCCTTGGTTTGGATCTGGGCCTTGGCGTTG
GCGGCCTACCTCGCGGGCGTGTTGTAGAAATTTTCGGGCCAGAATCTTCAGGCAAGACCACACTCTGCTTGCACGTTGTA
GCTGAAGTGCAAAAGCTTGGTGGCGTGGCTGCTTATATCGATGCAGAAAACGCACTCGATCCTGTTTACGCCAGCAAACT
GGGTGTAAACGTATCTGAAATGCTGATCTCTCAGCCCGATACCGGCGAGCAAGGCTTAGAAATCGCCGACATGCTGGTTC
GCTCTGGCGGCGTAGATATTATCGTGGTTGACTCGGTTGCCGCACTCACACCCAAAGCCGAAATCGAAGGCGAAATGGGC
GATGTACACGTGGGTCTGCAAGCACGCCTGATGAGCCAAGCTCTTCGTAAGCTCACCGGCAATATCAAGCGCACTAACAC
GCTGGTCATCTTTATTAACCAGCTGCGCATGAAGATTGGCAATATGATGCCGGGCCAAAGCCCTGAAACCACCACAGGTG
GTAATGCGCTGAAATTCTACGCATCGGTTCGTCTTGATATCCGCCGTATTGGCGCGGTTAAAAAAGGCGACGAGATCATT
GGCAACCAAACCAAAGTAAAAATCGCCAAAAACAAAGTGGCCCCGCCGTTCCGCATCGTGACCTTTGATATTCTTTACGG
CGAGGGCATTAGCCATGAAGGCGAGATCATCGAATACGGCGTTACGCATAAAATCGTTGAAAAAGCCGGTGCATGGTACA
GCTACAATGGTAATAAAATTGGCCAAGGCATGGAAAACTCCCGCCAATACCTTAAAGACAACCCTGAAGTGGCCGCAGAA
ATTGAGCAAAAAATTCGCGCAAAATTAGGCGCGGGTGGCTTATTGCCAATCGATCCTGCTGCTTTACTTGAAGATGGCAA
AGAAGAAGAGTTAGAAGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

74.006

92.635

0.686
  recA Neisseria gonorrhoeae strain FA1090

74.006

92.635

0.686
  recA Neisseria gonorrhoeae MS11

74.006

92.635

0.686
  recA Ralstonia pseudosolanacearum GMI1000

71.856

94.618

0.68
  recA Pseudomonas stutzeri DSM 10701

70.213

93.201

0.654
  recA Acinetobacter baumannii D1279779

64.957

99.433

0.646
  recA Acinetobacter baylyi ADP1

68.997

93.201

0.643
  recA Glaesserella parasuis strain SC1401

68.085

93.201

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.565

93.201

0.62
  recA Vibrio cholerae strain A1552

66.565

93.201

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.388

94.901

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.09

94.901

0.589
  recA Helicobacter pylori strain NCTC11637

62.236

93.768

0.584
  recA Helicobacter pylori 26695

61.934

93.768

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

62.08

92.635

0.575
  recA Streptococcus mutans UA159

57.062

100

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

61.28

92.918

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.701

94.901

0.567
  recA Streptococcus mitis SK321

59.394

93.484

0.555
  recA Streptococcus pyogenes NZ131

59.036

94.051

0.555
  recA Streptococcus pneumoniae Rx1

58.788

93.484

0.55
  recA Streptococcus pneumoniae R6

58.788

93.484

0.55
  recA Streptococcus pneumoniae TIGR4

58.788

93.484

0.55
  recA Streptococcus pneumoniae D39

58.788

93.484

0.55
  recA Streptococcus mitis NCTC 12261

58.788

93.484

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.879

93.484

0.541

Multiple sequence alignment