Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RSJ17_RS14200 Genome accession   NZ_CP014176
Coordinates   3008899..3009933 (-) Length   344 a.a.
NCBI ID   WP_039631994.1    Uniprot ID   A0A0C1RA24
Organism   Clostridium argentinense strain 89G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3003899..3014933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ17_RS14180 (RSJ17_14280) - 3004588..3004845 (-) 258 WP_039632001.1 HPr family phosphocarrier protein -
  RSJ17_RS14185 (RSJ17_14285) - 3004874..3006067 (-) 1194 WP_039631999.1 pyridoxal phosphate-dependent aminotransferase -
  RSJ17_RS14190 (RSJ17_14290) - 3006434..3006694 (-) 261 WP_039631998.1 stage V sporulation protein S -
  RSJ17_RS14195 (RSJ17_14295) rny 3006844..3008391 (-) 1548 WP_039631996.1 ribonuclease Y -
  RSJ17_RS14200 (RSJ17_14300) recA 3008899..3009933 (-) 1035 WP_039631994.1 recombinase RecA Machinery gene
  RSJ17_RS14205 (RSJ17_14305) pgsA 3010098..3010640 (-) 543 WP_039631992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RSJ17_RS14210 (RSJ17_14310) rimO 3010692..3012017 (-) 1326 WP_039631990.1 30S ribosomal protein S12 methylthiotransferase RimO -
  RSJ17_RS14215 (RSJ17_14315) - 3012057..3014393 (-) 2337 WP_080618979.1 FtsK/SpoIIIE family DNA translocase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37397.80 Da        Isoelectric Point: 5.2223

>NTDB_id=169259 RSJ17_RS14200 WP_039631994.1 3008899..3009933(-) (recA) [Clostridium argentinense strain 89G]
MNNEKLKALEAAMGQIEKQFGKGSVMKLGENSVLNLDSISTGCLGLDIGLGIGGVPRGRIVEIFGPESSGKTTVALHIVA
EAQKAGGVAAFIDAEHALDPVYAKALGVDIDNLIVSQPDTGEQGLEITEALVRSGAVDVVVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLAGSINKSKCVTIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRKIDTIKQGDEFLGNR
TRVKITKNKVAPPFKQAEFDIMYGEGISREGDVLDIAVKEEIVQKSGAWFSYGDTRLGQGRENAKNYFKENSELRLEIEN
KIREKYSLPLYKEEILVEEKDNEK

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=169259 RSJ17_RS14200 WP_039631994.1 3008899..3009933(-) (recA) [Clostridium argentinense strain 89G]
ATGAATAATGAAAAGTTAAAAGCCTTAGAAGCAGCTATGGGACAGATAGAAAAACAATTTGGTAAAGGTTCAGTAATGAA
GCTTGGAGAAAACAGTGTGCTTAATTTAGATTCAATATCTACAGGATGTCTAGGATTAGATATAGGATTGGGAATAGGCG
GAGTGCCTAGAGGAAGAATTGTAGAGATATTCGGACCAGAGTCTTCAGGTAAAACAACAGTAGCGCTACATATTGTTGCA
GAGGCTCAAAAAGCTGGAGGTGTGGCAGCTTTTATAGATGCAGAGCATGCATTAGATCCAGTATATGCCAAAGCTTTAGG
CGTTGATATAGATAATTTAATAGTTTCTCAACCTGACACTGGAGAACAAGGGCTTGAAATAACTGAGGCATTGGTTCGTT
CAGGTGCAGTAGATGTTGTAGTTGTAGACTCCGTTGCAGCTCTTGTACCAAAAGCAGAAATTGAAGGAGAAATGGGAGAT
TCTCATGTTGGACTTCAAGCTAGACTTATGTCACAAGCACTTAGAAAATTAGCAGGATCTATAAATAAATCAAAATGTGT
TACTATATTTATAAATCAACTTAGAGAAAAAGTTGGAGTAATGTTTGGAAATCCTGAAACTACTCCAGGTGGAAGAGCAC
TTAAATTCTATGCATCAGTTAGAATGGATGTAAGAAAAATTGATACTATTAAACAAGGTGATGAATTTTTAGGAAATAGA
ACTAGGGTTAAAATAACTAAAAATAAAGTTGCGCCTCCATTTAAACAAGCAGAATTCGATATCATGTATGGTGAGGGAAT
CTCAAGAGAAGGAGACGTTCTAGATATAGCAGTTAAAGAGGAAATAGTTCAAAAAAGTGGTGCATGGTTCTCTTATGGTG
ATACAAGATTAGGTCAAGGGAGAGAAAATGCTAAGAATTATTTTAAAGAAAACTCTGAATTAAGATTAGAGATAGAAAAT
AAAATAAGAGAAAAGTATAGCTTACCTTTGTATAAAGAAGAAATTTTAGTAGAAGAAAAAGATAATGAAAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1RA24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.325

94.767

0.657
  recA Latilactobacillus sakei subsp. sakei 23K

64.809

99.128

0.642
  recA Neisseria gonorrhoeae MS11

63.768

100

0.64
  recA Neisseria gonorrhoeae strain FA1090

63.768

100

0.64
  recA Neisseria gonorrhoeae MS11

63.768

100

0.64
  recA Streptococcus mitis NCTC 12261

64.327

99.419

0.64
  recA Streptococcus mutans UA159

63.295

100

0.637
  recA Streptococcus pneumoniae Rx1

63.478

100

0.637
  recA Streptococcus pneumoniae D39

63.478

100

0.637
  recA Streptococcus pneumoniae R6

63.478

100

0.637
  recA Streptococcus pneumoniae TIGR4

63.478

100

0.637
  recA Lactococcus lactis subsp. cremoris KW2

65.957

95.64

0.631
  recA Streptococcus pyogenes NZ131

65.854

95.349

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.152

95.93

0.625
  recA Streptococcus mitis SK321

65.35

95.64

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.049

94.186

0.622
  recA Vibrio cholerae strain A1552

64.742

95.64

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.742

95.64

0.619
  recA Pseudomonas stutzeri DSM 10701

64.923

94.477

0.613
  recA Helicobacter pylori 26695

64.615

94.477

0.61
  recA Helicobacter pylori strain NCTC11637

64.308

94.477

0.608
  recA Acinetobacter baumannii D1279779

64.308

94.477

0.608
  recA Acinetobacter baylyi ADP1

64.308

94.477

0.608
  recA Ralstonia pseudosolanacearum GMI1000

64.198

94.186

0.605
  recA Glaesserella parasuis strain SC1401

65

93.023

0.605
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

93.023

0.581

Multiple sequence alignment