Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AWM76_RS03705 Genome accession   NZ_CP014164
Coordinates   760212..761303 (+) Length   363 a.a.
NCBI ID   WP_003141064.1    Uniprot ID   A0AAU8UKD0
Organism   Aerococcus viridans strain CCUG4311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 755212..766303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM76_RS03690 (AWM76_03690) pgsA 756446..757024 (+) 579 WP_003143487.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AWM76_RS03695 (AWM76_03695) - 757333..758658 (-) 1326 WP_060779308.1 ISL3 family transposase -
  AWM76_RS03700 (AWM76_03700) - 758897..760123 (+) 1227 WP_039934657.1 competence/damage-inducible protein A -
  AWM76_RS03705 (AWM76_03705) recA 760212..761303 (+) 1092 WP_003141064.1 recombinase RecA Machinery gene
  AWM76_RS03710 (AWM76_03710) rny 761533..763104 (+) 1572 WP_003141062.1 ribonuclease Y -
  AWM76_RS03715 (AWM76_03715) - 763191..764714 (-) 1524 WP_060779293.1 IS1182 family transposase -
  AWM76_RS03720 (AWM76_03720) - 765085..766284 (+) 1200 WP_003142136.1 ATP-binding protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39452.54 Da        Isoelectric Point: 4.6665

>NTDB_id=169069 AWM76_RS03705 WP_003141064.1 760212..761303(+) (recA) [Aerococcus viridans strain CCUG4311]
MTMDKNDSNRQKALDDAMKKIERNFGKGSIMKMGERGDTRISTVPTGSLTLDISLGVGGYPRGRIIEVYGPESSGKTTVS
LHAIAEVQKRGGIAAFIDAENALDPEYAAKLGVNVDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIE
GEMGDSHIGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRGEQIKESGS
AIGNRTKIKIVKNKVAPPFKVAEVDIMYGEGISQEGELVDLAAELDIINKSGSWYSYGEDRIGQGRENAKQFLRENPEIR
ETIDGQVRQHFGFGQNGKLSEEELDALEANDQAQVELLEEETE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=169069 AWM76_RS03705 WP_003141064.1 760212..761303(+) (recA) [Aerococcus viridans strain CCUG4311]
ATGACTATGGATAAAAACGATAGCAACCGTCAAAAAGCATTAGACGATGCAATGAAAAAAATTGAGCGTAACTTTGGTAA
AGGCTCAATCATGAAAATGGGTGAACGCGGTGATACTAGAATTTCTACTGTTCCAACAGGTTCATTAACATTGGATATTT
CTTTAGGAGTTGGTGGCTACCCACGCGGTCGTATTATTGAAGTCTACGGACCAGAATCATCTGGTAAAACGACTGTTTCA
TTACATGCAATTGCGGAAGTACAAAAACGCGGTGGTATTGCAGCCTTTATCGATGCTGAGAATGCGCTAGATCCTGAATA
TGCAGCTAAACTAGGTGTAAACGTTGATGAGTTACTACTTTCTCAACCAGACACTGGTGAACAGGGTTTGGAGATTGCTG
ACGCTTTAGTATCTTCAGGTGCCATTGATATCATCGTTGTCGATTCAGTTGCAGCCTTAGTACCACGTGCCGAAATTGAA
GGTGAAATGGGTGACTCTCATATCGGTCTTCAAGCCCGGTTAATGTCTCAAGCATTACGTAAATTATCAGGTACCATCAA
CAAAACGAAAACAATCGCCATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTAATGTTTGGTAGTCCTGAAACAACAC
CAGGTGGTAGAGCCTTGAAATTCTACTCTACTGTACGTTTAGAAGTACGTCGTGGTGAACAAATTAAAGAGAGCGGTAGC
GCAATCGGTAACCGTACTAAAATTAAGATTGTTAAAAACAAGGTAGCACCACCATTCAAAGTGGCAGAAGTTGACATCAT
GTATGGGGAAGGGATTTCTCAAGAGGGTGAACTAGTTGACTTGGCAGCTGAATTAGACATCATTAACAAGTCCGGTTCTT
GGTATTCATATGGTGAAGACCGTATCGGTCAAGGCCGTGAGAATGCAAAACAATTTTTACGAGAAAACCCAGAAATTCGT
GAAACCATTGATGGACAAGTTCGACAACACTTCGGTTTTGGCCAAAATGGTAAATTAAGCGAAGAAGAACTAGATGCTTT
AGAAGCAAATGATCAAGCACAAGTGGAATTATTGGAAGAAGAAACAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

73.371

97.245

0.713
  recA Bacillus subtilis subsp. subtilis str. 168

78.182

90.909

0.711
  recA Streptococcus mitis NCTC 12261

66.017

98.898

0.653
  recA Streptococcus mitis SK321

65.738

98.898

0.65
  recA Streptococcus pneumoniae R6

68.235

93.664

0.639
  recA Streptococcus pneumoniae Rx1

68.235

93.664

0.639
  recA Streptococcus pneumoniae D39

68.235

93.664

0.639
  recA Streptococcus pneumoniae TIGR4

68.235

93.664

0.639
  recA Streptococcus pyogenes NZ131

70.031

90.083

0.631
  recA Streptococcus mutans UA159

69.817

90.358

0.631
  recA Lactococcus lactis subsp. cremoris KW2

66.967

91.736

0.614
  recA Acinetobacter baumannii D1279779

60.87

95.041

0.579
  recA Neisseria gonorrhoeae MS11

64.486

88.43

0.57
  recA Neisseria gonorrhoeae MS11

64.486

88.43

0.57
  recA Neisseria gonorrhoeae strain FA1090

64.486

88.43

0.57
  recA Ralstonia pseudosolanacearum GMI1000

63.777

88.981

0.567
  recA Acinetobacter baylyi ADP1

59.195

95.868

0.567
  recA Glaesserella parasuis strain SC1401

57.955

96.97

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.417

92.562

0.559
  recA Vibrio cholerae strain A1552

60.417

92.562

0.559
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

92.562

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

87.879

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.756

90.358

0.54
  recA Pseudomonas stutzeri DSM 10701

59.692

89.532

0.534
  recA Helicobacter pylori strain NCTC11637

56.395

94.766

0.534
  recA Helicobacter pylori 26695

56.395

94.766

0.534

Multiple sequence alignment