Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PcP3B5_RS22975 Genome accession   NZ_CP014158
Coordinates   5235652..5236713 (-) Length   353 a.a.
NCBI ID   WP_043271151.1    Uniprot ID   A0A1A5DB16
Organism   Pseudomonas citronellolis strain P3B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5230652..5241713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PcP3B5_RS22960 (PcP3B5_47300) - 5231932..5233353 (+) 1422 WP_043271148.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  PcP3B5_RS22965 (PcP3B5_47310) - 5233439..5234530 (+) 1092 WP_058070963.1 LOG family protein -
  PcP3B5_RS22970 (PcP3B5_47320) recX 5235179..5235643 (-) 465 WP_043271149.1 recombination regulator RecX -
  PcP3B5_RS22975 (PcP3B5_47330) recA 5235652..5236713 (-) 1062 WP_043271151.1 recombinase RecA Machinery gene
  PcP3B5_RS22980 (PcP3B5_47340) - 5236801..5237313 (-) 513 WP_043271153.1 CinA family protein -
  PcP3B5_RS22985 (PcP3B5_47350) mutS 5237396..5239969 (+) 2574 WP_177330910.1 DNA mismatch repair protein MutS -
  PcP3B5_RS22990 (PcP3B5_47360) fdxA 5240036..5240359 (+) 324 WP_009616706.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37622.98 Da        Isoelectric Point: 5.0352

>NTDB_id=168935 PcP3B5_RS22975 WP_043271151.1 5235652..5236713(-) (recA) [Pseudomonas citronellolis strain P3B5]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQRQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGKANAAKYLEENGEICAVLDK
AIREQLLNNQPAPTKAELAAAEAAEAAEADLDY

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=168935 PcP3B5_RS22975 WP_043271151.1 5235652..5236713(-) (recA) [Pseudomonas citronellolis strain P3B5]
ATGGACGACAACAAGAAGCGCGCCCTGGCCGCGGCCCTGGGACAGATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCCATCCCGGCCATCTCCACCGGCTCCCTCGGCCTGGACATCGCCCTGGGCATCGGCG
GCCTGCCGAAAGGCCGGATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTCTCGGTCATCGCC
GAAGCCCAGCGCCAGGGCGCCACCTGTGCCTTCGTCGACGCCGAGCACGCGCTGGACCCGGACTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTGGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
GCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACCACCACCGGCGGCAACGCCC
TGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTGGTGAAGAACAAGGTCGCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCACCGGCGAGATCATCGACCTGGGCGTGCAGCTGGGCCTGGTGGAGAAATCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTACCTGGAAGAGAACGGGGAAATCTGCGCGGTGCTGGACAAG
GCCATCCGCGAGCAACTGCTGAACAACCAGCCGGCGCCGACCAAGGCCGAGCTGGCTGCAGCCGAAGCTGCCGAGGCCGC
TGAAGCCGACCTCGACTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5DB16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.595

98.017

0.878
  recA Vibrio cholerae strain A1552

74.487

96.601

0.72
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.487

96.601

0.72
  recA Acinetobacter baylyi ADP1

72.779

98.867

0.72
  recA Acinetobacter baumannii D1279779

75.535

92.635

0.7
  recA Glaesserella parasuis strain SC1401

72.156

94.618

0.683
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.901

0.674
  recA Neisseria gonorrhoeae MS11

70.988

91.785

0.652
  recA Neisseria gonorrhoeae MS11

70.988

91.785

0.652
  recA Neisseria gonorrhoeae strain FA1090

70.988

91.785

0.652
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

92.635

0.603
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

63.11

92.918

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.377

94.618

0.581
  recA Streptococcus mutans UA159

56.901

100

0.572
  recA Streptococcus mitis NCTC 12261

56.534

99.717

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

61.859

88.385

0.547
  recA Streptococcus pneumoniae TIGR4

59.202

92.351

0.547
  recA Streptococcus pneumoniae Rx1

59.202

92.351

0.547
  recA Streptococcus pneumoniae D39

59.202

92.351

0.547
  recA Streptococcus pneumoniae R6

59.202

92.351

0.547
  recA Streptococcus mitis SK321

58.896

92.351

0.544
  recA Streptococcus pyogenes NZ131

58.769

92.068

0.541
  recA Lactococcus lactis subsp. cremoris KW2

56.656

91.501

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.556

91.785

0.51

Multiple sequence alignment