Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AUP74_RS10235 Genome accession   NZ_CP014143
Coordinates   2372027..2373061 (+) Length   344 a.a.
NCBI ID   WP_069947490.1    Uniprot ID   A0A1C9W8L0
Organism   Microbulbifer aggregans strain CCB-MM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2367027..2378061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUP74_RS10210 (AUP74_02061) - 2367130..2367654 (+) 525 WP_069947485.1 carboxymuconolactone decarboxylase family protein -
  AUP74_RS10215 (AUP74_02062) - 2367807..2367968 (-) 162 WP_069947486.1 DUF1328 family protein -
  AUP74_RS10220 (AUP74_02063) fdxA 2368179..2368502 (-) 324 WP_069947487.1 ferredoxin FdxA -
  AUP74_RS10225 (AUP74_02064) mutS 2368626..2371289 (-) 2664 WP_069947488.1 DNA mismatch repair protein MutS -
  AUP74_RS10230 (AUP74_02065) - 2371380..2371907 (+) 528 WP_069947489.1 CinA family protein -
  AUP74_RS10235 (AUP74_02066) recA 2372027..2373061 (+) 1035 WP_069947490.1 recombinase RecA Machinery gene
  AUP74_RS10240 (AUP74_02067) - 2373062..2373556 (+) 495 WP_069947491.1 regulatory protein RecX -
  AUP74_RS10245 (AUP74_02068) glpK 2373589..2375133 (+) 1545 WP_226999759.1 glycerol kinase GlpK -
  AUP74_RS10250 (AUP74_02069) - 2375180..2376202 (+) 1023 WP_069947493.1 class I fructose-bisphosphate aldolase -
  AUP74_RS10255 (AUP74_02070) - 2376321..2377160 (+) 840 WP_069947494.1 alpha/beta hydrolase -
  AUP74_RS10260 (AUP74_02071) - 2377260..2377445 (+) 186 WP_069948827.1 Trm112 family protein -
  AUP74_RS10265 (AUP74_02072) - 2377449..2377796 (+) 348 WP_069947495.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37170.56 Da        Isoelectric Point: 5.0583

>NTDB_id=168699 AUP74_RS10235 WP_069947490.1 2372027..2373061(+) (recA) [Microbulbifer aggregans strain CCB-MM1]
MDSNKDKALQAALSQIERQFGKGTVMRMGDKERERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLIVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGQGINLLGEIIDYGVKLGLIDKAGAWYSYKGDKIGQGKANAVKFLKENQDIRDEIEG
QLRAQLLGDLVPAKPEEVAETPED

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=168699 AUP74_RS10235 WP_069947490.1 2372027..2373061(+) (recA) [Microbulbifer aggregans strain CCB-MM1]
ATGGATTCCAACAAAGACAAGGCACTACAGGCGGCGCTGTCACAGATCGAGCGCCAGTTCGGTAAAGGTACCGTCATGCG
CATGGGGGACAAGGAGCGCGAGCGTATCCCCGCGATCTCCACCGGTTCCCTGGGTCTGGATGTGGCGCTGGGTATTGGCG
GACTGCCCCGCGGCCGTATTGTGGAAATCTATGGGCCGGAATCCTCCGGTAAAACCACCCTCACCCTGCAGGTGATTGCT
GAGGCCCAGCGCAAGGGCGGTACCTGTGCCTTCGTCGACGCCGAGCACGCGCTGGACCCGATCTATGCCGAAAAGCTGGG
TGTGAACGTTGATGAGCTGATTGTTTCCCAGCCGGACACCGGTGAGCAGGCCCTGGAAGTGGCTGACATGCTGGTGCGTT
CCGGTGCGGTGGATGTTCTGATCGTGGACTCCGTGGCGGCCCTGACACCCCGTGCCGAGATCGAGGGCGAGATGGGTGAT
TCCCATGTGGGCCTGCAGGCGCGCCTGATGTCCCAGGCCCTGCGCAAGCTCACCGGTAACATCAAGAACACCAATACCCT
GTGTGTGTTTATTAACCAGATCCGCATGAAGATTGGTGTGATGTTCGGTTCCCCCGAAACCACCACCGGTGGTAACGCGC
TCAAGTTCTACTCCTCCGTGCGCCTGGATATCCGCCGTATCGGCTCCGTGAAGGAGGGCGATGAAGTGGTGGGTAACGAG
ACTCGGGTGAAAGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAACAGACCGAGTTCCAGATCATGTACGGTCAGGGCAT
CAACTTGCTGGGCGAGATCATCGACTACGGTGTCAAGCTCGGCCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAAGG
GCGACAAGATCGGTCAGGGCAAGGCCAATGCAGTGAAGTTCCTGAAGGAAAACCAGGACATTCGCGACGAGATCGAGGGT
CAGCTGCGCGCCCAGCTGCTCGGCGATCTGGTGCCGGCCAAGCCCGAAGAAGTTGCAGAGACCCCGGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C9W8L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.198

100

0.782
  recA Vibrio cholerae strain A1552

71.848

99.128

0.712
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.848

99.128

0.712
  recA Acinetobacter baylyi ADP1

73.7

95.058

0.701
  recA Acinetobacter baumannii D1279779

73.7

95.058

0.701
  recA Neisseria gonorrhoeae MS11

72.923

94.477

0.689
  recA Neisseria gonorrhoeae MS11

72.923

94.477

0.689
  recA Neisseria gonorrhoeae strain FA1090

72.923

94.477

0.689
  recA Glaesserella parasuis strain SC1401

72.36

93.605

0.677
  recA Ralstonia pseudosolanacearum GMI1000

72.669

90.407

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.398

92.733

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

65.109

93.314

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

60.997

99.128

0.605
  recA Helicobacter pylori strain NCTC11637

64.89

92.733

0.602
  recA Helicobacter pylori 26695

64.89

92.733

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

96.221

0.599
  recA Streptococcus mitis NCTC 12261

58.671

100

0.59
  recA Streptococcus mitis SK321

58.092

100

0.584
  recA Streptococcus pneumoniae Rx1

60.061

95.349

0.573
  recA Streptococcus pneumoniae D39

60.061

95.349

0.573
  recA Streptococcus pneumoniae R6

60.061

95.349

0.573
  recA Streptococcus pneumoniae TIGR4

60.061

95.349

0.573
  recA Streptococcus mutans UA159

60.615

94.477

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

94.477

0.561
  recA Streptococcus pyogenes NZ131

58.951

94.186

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.975

94.767

0.549

Multiple sequence alignment